View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_high_24 (Length: 239)
Name: NF5256_high_24
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21852049 - 21852266
Alignment:
| Q |
1 |
cttcaatcaggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagag |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21852049 |
cttcagtcaggatgggctgatggaccagcatatgtgacacaatgccccatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagag |
21852148 |
T |
|
| Q |
101 |
gaacactcttttggcatgctcacatttcttggttaaggtcaacactctatggacctctcattattcttcccaagaaaaatgttcaatacccttttgcaaa |
200 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21852149 |
gaacactcttttggcatgctcatatatcttggttaaggtcaacactttatggtcctctcattattcttcccaagaaaaatgttcaatacccttttgcaaa |
21852248 |
T |
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| Q |
201 |
acctcacaaggaagttcc |
218 |
Q |
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|||||||||||||||||| |
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| T |
21852249 |
acctcacaaggaagttcc |
21852266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21181735 - 21181955
Alignment:
| Q |
1 |
cttcaatcaggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagag |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181735 |
cttcaatcaggatgggctgatggaccggcatatgtgactcaatgccccatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagag |
21181834 |
T |
|
| Q |
101 |
gaacactcttttggcatgctcacatttcttggttaaggtcaacactctatggacctctcattattcttcccaagaaaaatgttcaatacccttttgcaaa |
200 |
Q |
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|||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
21181835 |
gaacactcttttggcatgctcatatatcttggttaagatcaacactctatggtcctctcatcattcttcccaagaaaaatgttccatatccttttgcaaa |
21181934 |
T |
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| Q |
201 |
acctcacaaggaagttcctat |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
21181935 |
accccacaaggaagttcctat |
21181955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21208793 - 21209013
Alignment:
| Q |
1 |
cttcaatcaggatgggctgatggaccagcatat---gtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21208793 |
cttcaatcaggatgggctgatggaccagcatatcatgtgactcagtgccctatccaaacaggtcaaagctatgtttacaattacaccattaaaggccaaa |
21208892 |
T |
|
| Q |
98 |
gaggaacactcttttggcatgctcacatttcttggttaaggtcaacactctatggacctctcattattcttcccaagaaaaatgttcaatacccttttgc |
197 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
21208893 |
gaggaacactcttttggcatgctcatataccttggttaaggtcaacactctatggacctctcatcattcttcccaagaaaaatgttccatatccttttgc |
21208992 |
T |
|
| Q |
198 |
aaaacctcacaaggaagttcc |
218 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
21208993 |
aaaaccccacaaggaagttcc |
21209013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 21204499 - 21204715
Alignment:
| Q |
1 |
cttcaatcaggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagag |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21204499 |
cttcaatcaggatgggctgatgggccagcatatgtgactcaatgccccatccaaacagatcaaagctatgtttacaattacacaattaaaggccaaagag |
21204598 |
T |
|
| Q |
101 |
gaacactcttttggcatgctcacatttcttggttaaggtcaacactctatggacctctcattattcttcccaagaaaaatgttcaatacccttttgcaaa |
200 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||||| || ||||| |||||||||| |||||| |||||||| || |
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| T |
21204599 |
gaacactcttttggcatgctcatatatcttggttaagatcaacactctatggtccactcatcatacttccaaagaaaaatgatcaatatccttttgctaa |
21204698 |
T |
|
| Q |
201 |
acctcacaaggaagttc |
217 |
Q |
| |
|
||| ||||||||||||| |
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| T |
21204699 |
accccacaaggaagttc |
21204715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 22601828 - 22601990
Alignment:
| Q |
8 |
caggatgggctgatggaccagcatatgtgactcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacact |
107 |
Q |
| |
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|||||||| ||||||||||||||||||| || ||||| ||||| |||||| ||||| || ||||| | ||| |||| || ||||||||||| || |
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| T |
22601828 |
caggatggtctgatggaccagcatatgtaacacaatgtccaattcaaacaaatcaaacatacacatacaacttcaccattactggacaaagaggaaccct |
22601927 |
T |
|
| Q |
108 |
cttttggcatgctcacatttcttggttaaggtcaacactctatggacctctcattattcttcc |
170 |
Q |
| |
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||||||||||||||||| || ||| |||| |||| || ||||||||| |||| || ||||| |
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| T |
22601928 |
attttggcatgctcacatatcatggctaagagcaaccctttatggacctatcatcatccttcc |
22601990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 24070779 - 24070655
Alignment:
| Q |
37 |
actcaatgcccaatccaaacaggtcaaagctatgtttacaattacacaattaaaggccaaagaggaacactcttttggcatgctcacatttcttggttaa |
136 |
Q |
| |
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|||||||||||||| ||||||||||| || ||||| ||||| | ||| ||| || ||||||||||| || || ||||||||||| | || ||||||| |
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| T |
24070779 |
actcaatgcccaattcaaacaggtcagagttatgtgtacaacttcaccattgttggacaaagaggaactcttttctggcatgctcatttctcatggttaa |
24070680 |
T |
|
| Q |
137 |
ggtcaacactctatggacctctcat |
161 |
Q |
| |
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| | || |||||||||||||||| |
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| T |
24070679 |
gagctactgtctatggacctctcat |
24070655 |
T |
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