View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5256_high_3 (Length: 552)
Name: NF5256_high_3
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 48492401 - 48491867
Alignment:
| Q |
1 |
aggttgtcagtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnntggaggtaatcttgctgacagtagtattacaaaccggttcaaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492401 |
aggttgttagtttttggtgatttcgatttgattttgggtcaagctgaaaaaaaaaatggaggtaatcttgctgacagtagtattacaaaccggttcaaag |
48492302 |
T |
|
| Q |
101 |
acactatccaacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttagctagcaatcaatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492301 |
acactatccaacagtgtggcttaactggtttgggctatattggggatattttcatcacataaaagctagattggatggattcttagctagcaatcaatgg |
48492202 |
T |
|
| Q |
201 |
ttgtatatgttccctagtttctgatgcatttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgcagcattttcggtagt |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
48492201 |
ttgtatatgttccctagtttctaatgcatttcttttgttatttctcttggttttgtgtcatatctcatcagtgtgttgggtttgcagcatttttggtagt |
48492102 |
T |
|
| Q |
301 |
attctgttttggnnnnnnnccttttggactgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagattt |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492101 |
attctgttttggtttttttgcttttggactgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagattt |
48492002 |
T |
|
| Q |
401 |
gtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaagg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48492001 |
gtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaagg |
48491902 |
T |
|
| Q |
501 |
atttgtttctttatgtgctatcttggtgtcctggt |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
48491901 |
atttgtttctttatgtgctatcttggtgtcctggt |
48491867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 339 - 535
Target Start/End: Original strand, 51285873 - 51286069
Alignment:
| Q |
339 |
attattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggag |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||||| ||||| |
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|
| T |
51285873 |
attattagcagcttccgaatgatagaatcttctggagtttggttgttctgtagcttagatttgttgtctatattttggtggtttcaaaattgaggtggag |
51285972 |
T |
|
| Q |
439 |
ggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgctatcttggtgtcctggt |
535 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||||| |
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|
| T |
51285973 |
ggcttatcttgtttgtttttgtctcggctagaagcaattcaagtgcagcaagacagttgaggatttgtttccttttgtgctatcttggtatcctggt |
51286069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 321 - 535
Target Start/End: Original strand, 32636253 - 32636467
Alignment:
| Q |
321 |
cttttggactgtgtggtgattattagcagcttccgaatgatagaatcttctggagtttggttgttgtgtagcttagatttgtggtcgatattttggttgt |
420 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32636253 |
cttttggattgtgtggtgattattagcagcttccgaatgatagaatcttccggactttggttgttgtgtagcttagatttgtggtcgatattttggtggt |
32636352 |
T |
|
| Q |
421 |
ttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcagtaagacagttaaggatttgtttctttatgtgcta |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
32636353 |
ttcaaaattgagatggagggcttatcgtgtttgtttttgtctctgctaggagcaattcaagtgcagcaagacagttaaagatttgtttcttaatgtgcta |
32636452 |
T |
|
| Q |
521 |
tcttggtgtcctggt |
535 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32636453 |
tcttggtgtcctggt |
32636467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 44371069 - 44371206
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||| |
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|
| T |
44371069 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
44371168 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
44371169 |
acataaaagctagattggacagattcttagttagcaat |
44371206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 44379923 - 44380060
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
44379923 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
44380022 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
44380023 |
acataaaagctagattggacagattcttagttagcaat |
44380060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 23559496 - 23559359
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| | | ||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
23559496 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcggcgtggctttaatgatttgagctacattggggatattttcatc |
23559397 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
23559396 |
acataaaagctagattggacagattcttagttagcaat |
23559359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 13326120 - 13326021
Alignment:
| Q |
387 |
tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag |
486 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
13326120 |
tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag |
13326021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 13338456 - 13338357
Alignment:
| Q |
387 |
tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag |
486 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
13338456 |
tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag |
13338357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 19907600 - 19907812
Alignment:
| Q |
9 |
agtttttggtgatttcgatttgattttgggtcaagctgnnnnnnnnnntggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatc |
108 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||| ||||||||||| | ||| ||||||||||| |||| |||||||||||||||| |
|
|
| T |
19907600 |
agtttttggtgatttcaatttggttttgtgtcaagctgggaaaaaaa-tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatc |
19907698 |
T |
|
| Q |
109 |
caacagtgtggcttaattgatttgggctatattggggatattttcatcacataaaagctagattggatggattcttagctagcaatcaatggttgtatat |
208 |
Q |
| |
|
|| ||| ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||| |
|
|
| T |
19907699 |
cagcagcgtggctttaatgatttgggctacattggggatattttcatcacataaaagctagattggacagattcttagtttttaatcaatggttgtttat |
19907798 |
T |
|
| Q |
209 |
gttccctagtttct |
222 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
19907799 |
gttccctaatttct |
19907812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 27692592 - 27692729
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
27692592 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
27692691 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
27692692 |
acataaaagctagattggacagattcttagttagcaat |
27692729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 5667993 - 5667894
Alignment:
| Q |
387 |
tgtagcttagatttgtggtcgatattttggttgtttcaaaattgagatggagggcttatcgtgtttgtttttgtctctcctaggagcaattcaagtgcag |
486 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||| || |||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
5667993 |
tgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggcttgtcttgtttgttttcgtttcgcctaggagtaattcaagtgcag |
5667894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 20714456 - 20714593
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
20714456 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
20714555 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
20714556 |
acataaaagctagattggacagattcttagttagcaat |
20714593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 49227793 - 49227930
Alignment:
| Q |
57 |
tggaggtaatcttgctgacagtagtattacaaaccggttcaaagacactatccaacagtgtggcttaattgatttgggctatattggggatattttcatc |
156 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| ||||||| | ||||||| |||| |||||||||||||||||| |
|
|
| T |
49227793 |
tggaggtaatcctattgatagtagtattactaaccagttcaaagacactatccagcagcgtggctttaatgatttgagctacattggggatattttcatc |
49227892 |
T |
|
| Q |
157 |
acataaaagctagattggatggattcttagctagcaat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
49227893 |
acataaaagctagattggacagattcttagttagcaat |
49227930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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