View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5256_high_7 (Length: 502)
Name: NF5256_high_7
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_high_7 |
 | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 7581594 - 7581130
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7581594 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgat |
7581495 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7581494 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattc |
7581395 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7581394 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgctgcaagag |
7581295 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7581294 |
gcaatcccgcacatttttttactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
7581195 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacct |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7581194 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacct |
7581130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 7099652 - 7100114
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7099652 |
cattccaaatcatgtttccaacatcttcaacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgat |
7099751 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
7099752 |
ttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattc |
7099851 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|| ||||||||| |||| | ||| |||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
7099852 |
tcgtgcggtaaagcccagatctcactctctttaatttctaaccatgctttttcttcacttcttgaatgcattagacaccctaatgcttgtgctgcaagag |
7099951 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
7099952 |
gcaatcctccacacttttttactatctccttgcctattttcacaagctcagcacgctcttctctgtaatgtccaaatgcatattgtttgaacaacaacca |
7100051 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
|| |||| |||||||||||| ||||||| ||| |||| |||||||||| ||||||| ||||| |
|
|
| T |
7100052 |
gcactcatgatcagagagaaccgacaaaggacgggttgggcatgttcccgtgattgaggcaac |
7100114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 13616828 - 13617288
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
13616828 |
cattccaaatcatgtttccaacatcttcaacctccaatttttttttacatgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgat |
13616927 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||| |||||||| |||||||| |||||||| ||||| |||| ||||| | | || ||| |||||||| |
|
|
| T |
13616928 |
ttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaaggttggcgataaatg-aagtaactcagcctcaaatcaggaaaaatagaattc |
13617026 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|||| | ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
13617027 |
tcataccgtaaatcccaaagctcgctctctctaatttcacaccattccttttctccactcctcgagtgtattagagaccccaatgcttgtcctgcaagag |
13617126 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
13617127 |
gcaatcctccacactttttaactatctcctttcctattgcca-aagctctacacactcttctctatcatgttcgaatgcatattgtttgaacaataacca |
13617225 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
13617226 |
acattcaccatcatagagaactgacaaacaatgagttgagcatgttcccatgattgatgcaac |
13617288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 20296455 - 20295995
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| |||||||||| ||| |||||||||||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
20296455 |
ttccaaaccatgtttccaacatcttcaacgtccaaattacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagattt |
20296356 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| |||| |||||||||||||||||||||| ||||||||| |||| ||||||| ||||| |||||| |||| ||||| ||| |||||| |||| || || |
|
|
| T |
20296355 |
ctctatccttaggaaatatagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttc |
20296256 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| |||||| ||||||| || | |||||||| ||| |||||||||||||||| || ||||| ||||| || |||||||||| || |||||||||| |
|
|
| T |
20296255 |
ttgtggtaaagcccaaaggtcattgtctttaatatcacgccattccttttcttcattcattgagaccattaaacctcccaatgcttttgctgcaagaggc |
20296156 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| ||||||||||| |||||| ||||||||| || | ||||||||| | ||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
20296155 |
aatccattacatttctttactatctcctttcctatttccacaagctttgtatgctcttctctgtaatgtctaaatgcatgttgtttgaacaacaaccaac |
20296056 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
| ||| | ||||||| | |||||||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
20296055 |
aatcactgtaagagagaccagacaaagagtgagcttggcatgttcccatgattgttgcaac |
20295995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 52352189 - 52352595
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatctt-caacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatga |
116 |
Q |
| |
|
||||||||||||| |||||||| |||| | ||||||||||||| |||| ||||||||| |||| |||||||| |||||||||| || || || | || |
|
|
| T |
52352189 |
cattccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttagga |
52352288 |
T |
|
| Q |
117 |
tttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaatt |
216 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||| |||||||||||||||||||| | |||||| || || |||||||||| || |||||| ||||||| |
|
|
| T |
52352289 |
tttccgtatctttgggaaatatggcacagaaagagaaacattgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaatt |
52352388 |
T |
|
| Q |
217 |
ctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaaga |
316 |
Q |
| |
|
||||| | |||| |||||||| ||||||||||||||||| ||||||||||||| || | |||||| ||||||||| || |||||||||| |||||| |
|
|
| T |
52352389 |
ctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcgcattagacctcctaatgcttgtgcagcaaga |
52352488 |
T |
|
| Q |
317 |
ggcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacc |
416 |
Q |
| |
|
||||||||| |||| |||||| | |||||||||||||| |||||| | | |||||| |||||||| ||||||||||||||||||| || | || |
|
|
| T |
52352489 |
ggcaatcccccacacttctttactatcgctttgcctattgccactagctcttctcgttcttctatatcatgttcaaatgcatattgtttgaataacagcc |
52352588 |
T |
|
| Q |
417 |
aacattc |
423 |
Q |
| |
|
||||||| |
|
|
| T |
52352589 |
aacattc |
52352595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 17983138 - 17983591
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17983138 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgat |
17983237 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
17983238 |
ttctgcttctttgggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattc |
17983337 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||| || |||||||| |
|
|
| T |
17983338 |
tcatgcggtaaagcccagagctcgctctctttaatttcaaaccattcctttt---------ttgaatgcattaggcaccctaatgcttttgctgcaagag |
17983428 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||| | |
|
|
| T |
17983429 |
gcaatcctccacacttttttactatctccttgcctattttcacaagctcgaaaggctcttctctatcatgcccaaatgcatattgtttgaacaacaacta |
17983528 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
17983529 |
acattcattgtcagagagaactgacagaggacgagttggacatgttcccataattgaggcaac |
17983591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 30206753 - 30207173
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||| || |
|
|
| T |
30206753 |
cattccaaaccatgctgccaacatcttcaacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaa |
30206852 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||||| ||| || ||| || ||||| |
|
|
| T |
30206853 |
ttctgtatctttgggaaacatagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattc |
30206952 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
||||| |||||| ||||||| || |||||||||||||||| |||||| ||||||||| ||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
30206953 |
tcatgtggtaaagcccaaagttcactctctttaatttcaagccattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagag |
30207052 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
||||||| |||| ||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
30207053 |
gcaatccatcacatttctttactatctcctttcctatttccacaagctctgcacgctcttctctattttgtccaaatgcatattgtttgaacaacaacca |
30207152 |
T |
|
| Q |
418 |
acattcatcatcagagagaac |
438 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
30207153 |
acattcattatcagagagaac |
30207173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 29872407 - 29872867
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
29872407 |
ttccaaaccatgtttccaacatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggattt |
29872506 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
|| |||| || ||||||||||| ||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||| ||| ||||| ||||||| || |
|
|
| T |
29872507 |
ttctatccttgggaaatatagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttc |
29872606 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|||| |||| |||||||||| || || ||||| |||| |||||||||||||||| |||||||| ||| | || |||||||||| || |||||||||| |
|
|
| T |
29872607 |
ttgcgataaagcccaaagctcactgtccttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggc |
29872706 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| || |||||||| |||||| ||| ||||| || | ||||||||| | || |||||||||||||| ||||||||| ||||||| |
|
|
| T |
29872707 |
aatccattacatttctttacaatctcctttcctatttccataagctttgtatgctcttctctgtaatatccaaatgcatattctttgaacaacaaccaac |
29872806 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
||||| |||||||| | | |||||||| ||| | ||||||||||| ||||| |||||| |
|
|
| T |
29872807 |
attcactatcagagataccagacaaagagtgagcttggcatgttcccacgattgttgcaac |
29872867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 30521500 - 30521047
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||| ||||||| || ||||| |||||| | || || ||||| |||||||| | ||| |||||||||| |
|
|
| T |
30521500 |
cattccaaatcatatttccaacatcttctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgat |
30521401 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|| | ||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||| |||||||| |
|
|
| T |
30521400 |
ttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattc |
30521301 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|||| ||||||| ||||| | ||| ||||||||||||| |||||| |||||| ||||||||||| |||||| | ||||||||||||| |||||||| |
|
|
| T |
30521300 |
tcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaagag |
30521201 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30521200 |
gcaatcccccacacttctttactatctcttttcctattgtgacaagctcagtctgctgctctctatcatgtcgaaatgcatattgtttgaacaacaacca |
30521101 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgat |
471 |
Q |
| |
|
|||||||| ||||| ||| | |||||| | ||| | ||||||||||||||| |
|
|
| T |
30521100 |
acattcatattcagatagaccagacaaatgatgagcttggcatgttcccatgat |
30521047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 30561840 - 30561387
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||| ||||||| || ||||| |||||| | || || ||||| |||||||| | ||| |||||||||| |
|
|
| T |
30561840 |
cattccaaatcatatttccaacatcttctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgat |
30561741 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|| | ||||||| ||||| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||| |||||||| |
|
|
| T |
30561740 |
ttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattc |
30561641 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|||| ||||||| ||||| | ||| ||||||||||||| |||||| |||||| ||||||||||| |||||| | ||||||||||||| |||||||| |
|
|
| T |
30561640 |
tcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaagag |
30561541 |
T |
|
| Q |
318 |
gcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataacca |
417 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30561540 |
gcaatcccccacacttctttactatctcttttcctattgtgacaagctcagtctgctgctctctatcatgtcgaaatgcatattgtttgaacaacaacca |
30561441 |
T |
|
| Q |
418 |
acattcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgat |
471 |
Q |
| |
|
|||||||| ||||| ||| | |||||| | ||| | ||||||||||||||| |
|
|
| T |
30561440 |
acattcatattcagatagaccagacaaatgatgagcttggcatgttcccatgat |
30561387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 22 - 480
Target Start/End: Original strand, 30400309 - 30400767
Alignment:
| Q |
22 |
ccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattttt |
121 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||| | ||||||||| ||| |||||||||||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
30400309 |
ccaaaccatgatgccaacatcttcaacctccgtattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttcc |
30400408 |
T |
|
| Q |
122 |
gtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctcat |
221 |
Q |
| |
|
|||| || ||||||||||||||||||| ||||||||| |||| ||| |||| ||||| |||||| |||||||||| || ||||| || |||| || | |
|
|
| T |
30400409 |
ctatccttgggaaatatagcacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttctt |
30400508 |
T |
|
| Q |
222 |
gcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggcaa |
321 |
Q |
| |
|
|||||| |||||||||| | |||||||| |||| ||||||||||||| || |||||||| ||| | || |||||||||| || |||||||||||| |
|
|
| T |
30400509 |
ctggtaaagcccaaagctcagtgtctttaatatcaagccattccttttctccattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaa |
30400608 |
T |
|
| Q |
322 |
tcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacat |
421 |
Q |
| |
|
||| ||| ||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
30400609 |
tccattacatttctttactatctcctttcctattgctacaagttctgcacgctcttctctataatgtcccaatgcatattctttgaacaacaaccaacat |
30400708 |
T |
|
| Q |
422 |
tcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
||| |||||||||| | |||||||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
30400709 |
tcactatcagagagaccagacaaagagtgagcttggcatgttcccatgattgttgcaac |
30400767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 29853544 - 29854004
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| ||| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||| |||||| |||| ||||| |
|
|
| T |
29853544 |
ttccaaaccatatttccaacatcttcaacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggattt |
29853643 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| ||| || ||||||||||| ||||| | |||||||||||||| |||||||| ||||| |||||| |||||||||| ||| ||||| ||||||| || |
|
|
| T |
29853644 |
ctccatccttgggaaatatagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttc |
29853743 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| |||||| |||||||||| || |||||||| |||| |||||||||||||||| |||||||| ||| | || ||||||| || || |||||||||| |
|
|
| T |
29853744 |
ttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggc |
29853843 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| || |||||||| |||||| ||||||||| || | ||||||||| || |||||||||||||| ||||||||| ||||||| |
|
|
| T |
29853844 |
aatccattacatttctttacaatctcctttcctatttccacaagctttgtatgctcttctctgaaatatccaaatgcatattctttgaacaacaaccaac |
29853943 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
||||| |||||||||| | ||||||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
29853944 |
attcactatcagagagaccatacaaagagtgagcttggcatgttcccatgattgttgcaac |
29854004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 30749878 - 30750292
Alignment:
| Q |
22 |
ccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattttt |
121 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| ||||| || |||||| | ||||| | |
|
|
| T |
30749878 |
ccaaaccatgatgccaacatcttcaacctccatattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttct |
30749977 |
T |
|
| Q |
122 |
gtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctcat |
221 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||||||||||| || || | ||||| |||||| |||||||||| ||| |||||| | ||||| |||| |
|
|
| T |
30749978 |
gcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcat |
30750077 |
T |
|
| Q |
222 |
gcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggcaa |
321 |
Q |
| |
|
| |||||||||||| || || |||||||||| || |||||||||||| || ||||||||| ||||| || |||||||||| || |||||||||||| |
|
|
| T |
30750078 |
ctgataaatcccaaagttcactatctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaa |
30750177 |
T |
|
| Q |
322 |
tcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacat |
421 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||| || || |||| ||||||| | | |||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
30750178 |
tccattacatttctttactatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatattgttcgaacaacagccaacat |
30750277 |
T |
|
| Q |
422 |
tcatcatcagagaga |
436 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
30750278 |
tcactatcagagaga |
30750292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 20 - 445
Target Start/End: Complemental strand, 30338395 - 30337973
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| | | || ||||||| |||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
30338395 |
ttccaaaccatgtttccaacatcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagttgaatcaattcttccttcaggattt |
30338299 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||| | ||||||||| |||| |||||||| ||||| |||||| ||||| |||| ||| || ||| |||| || || |
|
|
| T |
30338298 |
ctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttc |
30338199 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
||| ||||||||||||||||| || |||||||| |||| |||||||||||||||| || ||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
30338198 |
atgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggc |
30338099 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| ||||||||||| || ||| ||||||||| || | ||||||| | | | || |||||||| |||||||||||| ||||||| |
|
|
| T |
30338098 |
aatccattacatttctttactatctcctttccaatttccacaagctttgtatcctcttctttgttacgtttaaatgcatgttgtttgaacaacaaccaac |
30337999 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaa |
445 |
Q |
| |
|
| ||| |||||||||| | |||||| |
|
|
| T |
30337998 |
aatcactatcagagagaccagacaaa |
30337973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 30242245 - 30241838
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| || ||| || || ||||||| |||||||||| || || ||||||| ||||||||||| ||||| |
|
|
| T |
30242245 |
ttccaaaccatgtttccaacatcttcaacctctaa---tttcctctttgcaataaatccattagccattcagagctgaatcaattcttccttcaggattt |
30242149 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| |||||||||| ||| ||||| |||| || |
|
|
| T |
30242148 |
ctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtgttaaataaaagtaactcaacctcaaagcaggcaa-----aatt-tc |
30242055 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| || || ||||||||||||| ||||||||||||| |||||||| ||||||| |||||||| ||||| || |||||||||| | |||||||||| |
|
|
| T |
30242054 |
ttgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggc |
30241955 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| || |||||||| |||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30241954 |
aatccattacatttctttacaatctcctttcctattttcacaagctttgtactctcttctctataatgtccaaatgcatattgtttgaacaacaaccaac |
30241855 |
T |
|
| Q |
420 |
attcatcatcagagaga |
436 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
30241854 |
attcatcctcggagaga |
30241838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 30483637 - 30484034
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| | | || ||||||| |||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
30483637 |
ttccaaaccatgtttccaacatcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagctgaatcaattcttccttcaggattt |
30483733 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||| | ||||||||| |||| |||||||| ||||| |||||| |||||||||| ||| || ||| |||| || || |
|
|
| T |
30483734 |
ctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttc |
30483833 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
||| ||||||||||||||||| || |||||||| |||| |||||||||||||||| || ||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
30483834 |
atgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggc |
30483933 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| ||||||||||| || || ||||||||| || | ||||||| | | | ||| |||||||| |||||||||||| ||||||| |
|
|
| T |
30483934 |
aatccattacatttctttactatctcctttccaatctccacaagctttgtatgctcttctttgttacgtctaaatgcatgttgtttgaacaacaaccaac |
30484033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 30436049 - 30436506
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| ||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||||| || | ||||| |
|
|
| T |
30436049 |
ttccaaaccatttttccaacatcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggattt |
30436148 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| |||| || ||||||||||||||||||| ||||||||| |||| |||||||| ||||| |||||| ||||| |||| ||| |||||| ||||||| || |
|
|
| T |
30436149 |
ctctatccttgggaaatatagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttc |
30436248 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| |||||| |||||||||| || |||||||| |||| |||||||||||||||| |||||||| ||| | || ||||||||||| || |||||||||| |
|
|
| T |
30436249 |
ttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggc |
30436348 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| ||||||||||| || ||| |||||| || || | ||||| | | | ||| |||||||| |||||||||||| ||||||| |
|
|
| T |
30436349 |
aatccattacatttctttactatctcctttccaatttccacaaactttgtatgctctt---tgtaacgtctaaatgcatgttgtttgaacaacaaccaac |
30436445 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
| ||| |||||||||| | |||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
30436446 |
agtcactatcagagagaccagacaaacggtgagtttcccatgttcccatgattgttgcaac |
30436506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 436
Target Start/End: Original strand, 30060610 - 30061018
Alignment:
| Q |
28 |
catgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgatttttgtatct |
127 |
Q |
| |
|
|||| |||||||||||||||||||| | | ||||||||||| ||| |||||||||||||||| ||||| ||||||||| | ||||| || |||| |
|
|
| T |
30060610 |
catgatgccaacatcttcaacctccgtagtacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatct |
30060709 |
T |
|
| Q |
128 |
ttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctcatgcggta |
227 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| || || | ||||| |||||| |||||||||| ||| |||||| | ||||| |||| | || |
|
|
| T |
30060710 |
ttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgata |
30060809 |
T |
|
| Q |
228 |
aatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggcaatcccgc |
327 |
Q |
| |
|
|||||||||| || || |||||||||| || |||||||||||| || ||||||||| ||||| || ||||||| || || ||||||||||||||| |
|
|
| T |
30060810 |
aatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccatt |
30060909 |
T |
|
| Q |
328 |
acannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacattcatca |
427 |
Q |
| |
|
|| ||||||||||| ||||||||||| || || |||| ||||||| | | |||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
30060910 |
gcatttctttactatctcctttcctattgccacgagatcagcacgctcttctttgtgatgtccaaatgcatattgttcgaacaacaaccaacattcacta |
30061009 |
T |
|
| Q |
428 |
tcagagaga |
436 |
Q |
| |
|
||||||||| |
|
|
| T |
30061010 |
tcagagaga |
30061018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 30713298 - 30712994
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||| |||||| || | ||||| |
|
|
| T |
30713298 |
ttccaaaccatgtttccaacatcttcaacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggattt |
30713199 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| |||| || ||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||| |||| ||||| ||| |||||| ||||||| || |
|
|
| T |
30713198 |
ctctatccttgggaaatatagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttc |
30713099 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| |||||| |||||||||| || |||||||| |||| |||||| ||||||||| |||||||| ||| | || ||||||||||| || |||||| ||| |
|
|
| T |
30713098 |
ttgtggtaaagcccaaagctcactgtctttaatatcaagccattcattttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggc |
30712999 |
T |
|
| Q |
320 |
aatcc |
324 |
Q |
| |
|
||||| |
|
|
| T |
30712998 |
aatcc |
30712994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 69 - 436
Target Start/End: Original strand, 30475657 - 30476024
Alignment:
| Q |
69 |
aaataaattcattagccatccaaagatgaatcagttcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggt |
168 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||| |||||||| | |||| ||||||| |||||||| ||||||||||| ||||| | |||||||| |
|
|
| T |
30475657 |
aaataaatccattgcccatccatagatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggt |
30475756 |
T |
|
| Q |
169 |
tggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttt |
268 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||||| | |||||||||| ||||| ||| || | || ||||||||||||| |||||| ||| |
|
|
| T |
30475757 |
cggtgttaaatgaaagtagcttaacctcaaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattt |
30475856 |
T |
|
| Q |
269 |
tcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctg |
368 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||| ||||||||| |
|
|
| T |
30475857 |
tcatcactccttgagcgcattagacctcccaatgcttgtgctgcaagaggcaatcctccacacttctttactatcgccttacctattgctacaagctctt |
30475956 |
T |
|
| Q |
369 |
cactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacattcatcatcagagaga |
436 |
Q |
| |
|
| | ||||||| | || |||||||||||||||| | ||||| ||||||||||| | ||||||||| |
|
|
| T |
30475957 |
cccgttcttctccagcacatccaaatgcatattgtctaaacaacaaccaacattcgttttcagagaga |
30476024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 436
Target Start/End: Complemental strand, 30676978 - 30676745
Alignment:
| Q |
203 |
ggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatg |
302 |
Q |
| |
|
|||||| ||||||| | || |||||| |||||||||| || |||||||| |||| ||||||||| |||||| |||||||| ||| | || |||||||| |
|
|
| T |
30676978 |
ggcaaaatagaatttttttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaatg |
30676879 |
T |
|
| Q |
303 |
cttgtgttgcaagaggcaatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattg |
402 |
Q |
| |
|
||| || ||||||||||||||| ||| ||||||||||| || ||| ||||||||| || | ||||||| | | | || |||||||| ||| |
|
|
| T |
30676878 |
cttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccacaagctttgtatcctcttctttgttacgtttaaatgcatgttg |
30676779 |
T |
|
| Q |
403 |
tttgaacaataaccaacattcatcatcagagaga |
436 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||| |
|
|
| T |
30676778 |
tttgaacaacaaccaacaatcactatcagagaga |
30676745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 30330908 - 30330779
Alignment:
| Q |
140 |
gcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctcatgcggtaaatcccaaagct |
239 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| | ||||||||||||||||||||||| | | | |||| || ||| | ||| ||||| ||||||| | |
|
|
| T |
30330908 |
gcacaaaaagcaaaacactgctttaaggttggagttaaatgaaagtagctcaacctcaaatcagacaaactataatcattatgttgtaaaacccaaagtt |
30330809 |
T |
|
| Q |
240 |
cgctctctttaatttcaaaccattcctttt |
269 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
30330808 |
cgctctctttaatttcaagtcattcctttt |
30330779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 17418148 - 17418050
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacattcatcatcagagaga |
436 |
Q |
| |
|
||||| ||||||||||||| ||||| || | | ||||||| | |||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17418148 |
actatatccttgcctattgggacaagttcctcgcgctcttctttgtcatttccaaatgcatattgtttgaacaacaaccaacattcattatcagagaga |
17418050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 26707568 - 26708025
Alignment:
| Q |
20 |
ttccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgattt |
119 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||| | | || ||||||| |||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
26707568 |
ttccaaaccatgtttccaacatcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagttgaatcaattcttccttcaagattt |
26707664 |
T |
|
| Q |
120 |
ttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattctc |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||| ||| |||||| |||| || || |
|
|
| T |
26707665 |
ctctatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttc |
26707764 |
T |
|
| Q |
220 |
atgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagaggc |
319 |
Q |
| |
|
|| ||||||||||||||||| || |||||||| |||| |||||||||||||||| || ||||| ||||| || |||||||||| || ||||||||| |
|
|
| T |
26707765 |
ttgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaacattaaacctcccaatgcttttgctgcaagaggt |
26707864 |
T |
|
| Q |
320 |
aatcccgcacannnnnnnactatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaac |
419 |
Q |
| |
|
||||| ||| ||||||||||| |||||| ||||||||| || | ||||||||| | ||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
26707865 |
aatccattacatttttttactatctcctttcctatttccacaagctttgtatgctcttctctgtaatgtctaaatgcatgttgtttgaacaacaaccaac |
26707964 |
T |
|
| Q |
420 |
attcatcatcagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaac |
480 |
Q |
| |
|
| ||| |||||||||| | |||||||| ||| | ||||||||||||||||| |||||| |
|
|
| T |
26707965 |
agtcactatcagagagaccagacaaagagtgagcttggcatgttcccatgattgttgcaac |
26708025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 25293799 - 25293497
Alignment:
| Q |
18 |
cattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgat |
117 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
25293799 |
cattccaaaccatgctgccaacatcttcaacctccaaattttccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgat |
25293700 |
T |
|
| Q |
118 |
ttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaacctcagagctggcaaagtagaattc |
217 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||| | |||||||| || | ||||| |||||||||||||| || | || ||| |||||||| |
|
|
| T |
25293699 |
ttttgtatcttttggaaacatagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagctcaaccacaaggaaggaaaaatagaattc |
25293600 |
T |
|
| Q |
218 |
tcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattagacaccccaatgcttgtgttgcaagag |
317 |
Q |
| |
|
|| || ||||| |||||||| |||| |||||||||| ||| || |||||| ||||||||||| ||||||||| || ||| |||||| |||||||| |
|
|
| T |
25293599 |
tcttgttgtaaagcccaaagcgtgctcagcttaatttcaagccactctttttctccactccttgagcgcattagacctccaaatacttgtgctgcaagag |
25293500 |
T |
|
| Q |
318 |
gca |
320 |
Q |
| |
|
||| |
|
|
| T |
25293499 |
gca |
25293497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 25293484 - 25293411
Alignment:
| Q |
350 |
cctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaacattc |
423 |
Q |
| |
|
|||||||| ||||| | ||||| ||| ||| | | ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25293484 |
cctattgcgacaagttttgcacactcatctttgtaatgtccaaatgcatattgtttgaacaacaaccaacattc |
25293411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 38939578 - 38939498
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaataaccaa |
418 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| | ||| ||||||| |||| |||||| || ||| ||||| |
|
|
| T |
38939578 |
actatctccttgcctattgctacaagctctgcatgctcttccccatctggtccaaaagcatgttgtttaaataatgaccaa |
38939498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 9295 - 9340
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9295 |
actaactccttgcctattgccacaagctctgcacgctcttctctat |
9340 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 4615 - 4660
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4615 |
actaactccttgcctattgccacaagctctgcacgctcttctctat |
4660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 18873409 - 18873364
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18873409 |
actaactccttgcctattgccacaagctctgcacgctcttctctat |
18873364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 383
Target Start/End: Original strand, 16797119 - 16797156
Alignment:
| Q |
346 |
cttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16797119 |
cttgcctattgccacaagctctgcacgctcttctctat |
16797156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 18806415 - 18806370
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
18806415 |
actaactccttgcctattgccacaagctctgctcgctcttctctat |
18806370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 16987119 - 16987171
Alignment:
| Q |
61 |
tctagatgaaataaattcattagccatccaaagatgaatcagttcttccttca |
113 |
Q |
| |
|
|||||||| || || | |||||||||||||||||||||| || |||||||||| |
|
|
| T |
16987119 |
tctagatgtaacaagtccattagccatccaaagatgaatgagatcttccttca |
16987171 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 8458 - 8522
Alignment:
| Q |
347 |
ttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaa |
411 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || | |||||| || | |||||||||||| |
|
|
| T |
8458 |
ttgcctattgccacaagctctgcacgctcttctcgattttctccaaaagcttgttgtttgaacaa |
8522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 12800 - 12836
Alignment:
| Q |
347 |
ttgcctattgccacaagctctgcactctcttctctat |
383 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12800 |
ttgcctattgccacaagctctgcacgctcttctctat |
12836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 8816 - 8904
Alignment:
| Q |
61 |
tctagatgaaataaattcattagccatccaaagatgaatcagttcttccttcatgatttttgtatctttaggaaatatagcacaaaaag |
149 |
Q |
| |
|
|||||||| || || | |||||||||||||||| ||||| || | |||||||| ||||| |||||||||||| | ||||||||||| |
|
|
| T |
8816 |
tctagatgtaacaagtccattagccatccaaagttgaatgagattttccttcaccattttaaaatctttaggaaaaacagcacaaaaag |
8904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 13378033 - 13378073
Alignment:
| Q |
338 |
actatctccttgcctattgccacaagctctgcactctcttc |
378 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
13378033 |
actatctccttgcctattgctgcaagctctgcacgctcttc |
13378073 |
T |
|
Back To:
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