View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256_low_1 (Length: 668)

Name: NF5256_low_1
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256_low_1
NF5256_low_1
[»] chr2 (5 HSPs)
chr2 (202-438)||(12644590-12644825)
chr2 (468-650)||(12635063-12635246)
chr2 (20-81)||(12644870-12644931)
chr2 (468-514)||(6962157-6962204)
chr2 (437-490)||(40498049-40498102)
[»] chr6 (1 HSPs)
chr6 (311-539)||(29010702-29010929)
[»] chr1 (2 HSPs)
chr1 (308-537)||(51119483-51119711)
chr1 (436-543)||(25590733-25590841)
[»] chr4 (7 HSPs)
chr4 (311-539)||(28964678-28964903)
chr4 (412-541)||(7043320-7043451)
chr4 (436-543)||(11494116-11494224)
chr4 (440-543)||(9881281-9881385)
chr4 (470-539)||(32347602-32347670)
chr4 (470-539)||(26905393-26905461)
chr4 (40-81)||(39634347-39634388)
[»] chr8 (1 HSPs)
chr8 (436-543)||(26794256-26794364)
[»] chr3 (2 HSPs)
chr3 (412-533)||(1663322-1663444)
chr3 (436-543)||(51810557-51810665)
[»] chr5 (2 HSPs)
chr5 (436-486)||(14234156-14234206)
chr5 (40-73)||(18953194-18953227)
[»] scaffold0019 (1 HSPs)
scaffold0019 (436-539)||(59478-59580)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 7e-94; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 202 - 438
Target Start/End: Complemental strand, 12644825 - 12644590
Alignment:
Q  202 ttttcacttctcttctcatcaaattttgcaacaactagtattagtattgttatggaccagctaaaaggtcaatccaacattgacaaatggacaaggagcc 301  Q
    |||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12644825 tttttacttctctttttatcaaattttgcaacaactagtaatagtattgttatggaccaactaaaaggtcaatccaacattgacaaatggacaaggagcc 12644726  T
Q  302 cgccagctctgttagatctaactatgatcaatttgcgcaacataagtgccttttaaaataagttgttttgagcaagatgnnnnnnntagcaaacaaaatg 401  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||       ||| ||||||||||    
T  12644725 cgccagctctgttagatcaaactatgatcaatttgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatg-agaaaatagaaaacaaaatg 12644627  T
Q  402 taaagttgagagagaagagaataaagagtgtttcctt 438  Q
    |||||||||||||||||||||||||||||||||||||    
T  12644626 taaagttgagagagaagagaataaagagtgtttcctt 12644590  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 468 - 650
Target Start/End: Complemental strand, 12635246 - 12635063
Alignment:
Q  468 tacacattacaaagccttttataggcaaatataacacttgcttgtagcataagttatctcactaactaacaagttt-gtnnnnnnnnttctaaccaactt 566  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||    
T  12635246 tacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaaccaactt 12635147  T
Q  567 gctatgtggcagttatggattaactcttaacaggatcaatgcacgtcacttgtgcaaacatcctgactttggttcacgccaccc 650  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||    
T  12635146 gctatgtggcagttatgtattaactcttaacaggatcaacgcatgtcacttgtgcgaacaccctgactttggtgcacgccaccc 12635063  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 12644931 - 12644870
Alignment:
Q  20 ctgatgatctgaagttttgtcaagaggtaagtaaagtttgtgcaagaattgttctactcaag 81  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12644931 ctgatgatctgaagttttgccaagaggtaagtaaagtttgtgcaagaattgttctactcaag 12644870  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 6962204 - 6962157
Alignment:
Q  468 tacacattacaaagccttt-tataggcaaatataacacttgcttgtag 514  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  6962204 tacacattacaaagcctttatataggcaaaattaacacttgcttgtag 6962157  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 490
Target Start/End: Complemental strand, 40498102 - 40498049
Alignment:
Q  437 ttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttttata 490  Q
    |||||||||||||||||||||||| | ||  | |||| ||||||||||||||||    
T  40498102 ttgcaatgtgaatctcattaagaattaaagttgcacaatacaaagccttttata 40498049  T

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Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 539
Target Start/End: Original strand, 29010702 - 29010929
Alignment:
Q  311 tgttagatctaactatgatcaatttgcgcaacataagtgccttttaaaataagttgttttgagcaagatgnnnnnnntagcaaacaaaatgtaaagttga 410  Q
    ||||||||| || ||||||| |||||||||  | |||||| | || | |||||||| ||| |||||||||       ||||||||||| ||||||  |||    
T  29010702 tgttagatcaaattatgatctatttgcgcagtaaaagtgcttattcagataagttgctttaagcaagatgataaaa-tagcaaacaaactgtaaaactga 29010800  T
Q  411 gagagaagagaataaagagtgtttccttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatataacacttgctt 510  Q
    || |||| | |||| | || |  | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |  |||||||    
T  29010801 gatagaatataatagaaagagcatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgctt 29010900  T
Q  511 gtagcataagttatctcactaactaacaa 539  Q
    |||||| ||| ||||||||||||||||||    
T  29010901 gtagcacaagctatctcactaactaacaa 29010929  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 308 - 537
Target Start/End: Complemental strand, 51119711 - 51119483
Alignment:
Q  308 ctctgttagatctaactatgatcaatttgcgcaacataagtgccttttaaaataagttgttttgagcaagatgnnnnnnntagcaaacaaaat-gtaaag 406  Q
    |||||||||||| ||||||||||||  |||||||||||||||  ||| | |||||| |||||  |||||||||       || |||||||| | |||||     
T  51119711 ctctgttagatcaaactatgatcaaaatgcgcaacataagtgtttttcataataagctgtttcaagcaagatgagaaaa-taacaaacaaacttgtaaaa 51119613  T
Q  407 ttgagagagaagagaataaagagtgtttccttgcaat-gtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatataacact 505  Q
     |||||||  ||||||| ||||||  || |||| ||| || |||||||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||    
T  51119612 ctgagagaatagagaatgaagagt--ttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacact 51119515  T
Q  506 tgcttgtagcataagttatctcactaactaac 537  Q
    | ||||||||| ||| ||||| ||||||||||    
T  51119514 tacttgtagcacaagctatctaactaactaac 51119483  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 436 - 543
Target Start/End: Original strand, 25590733 - 25590841
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttt-tataggcaaatataacacttgcttgtagcataagttatctcactaact 534  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||| |||||  ||||||||||||||| |||||  |||||||||||||    
T  25590733 cttgcaatgtgaatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaact 25590832  T
Q  535 aacaagttt 543  Q
    ||| |||||    
T  25590833 aactagttt 25590841  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 311 - 539
Target Start/End: Original strand, 28964678 - 28964903
Alignment:
Q  311 tgttagatctaactatgatcaatttgcgcaacataagtgccttttaaaataagttgttttgagcaagatgnnnnnnntagcaaacaaaatgtaaagttga 410  Q
    ||||||||| ||||||||||||  |||||||||||||||| |||  | ||||| |||||| || ||||||       || |||||    ||||||  |||    
T  28964678 tgttagatcaaactatgatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatgagaaat-taacaaact---tgtaaaactga 28964773  T
Q  411 gagagaagagaataaagagtgtttccttgcaat-gtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatataacacttgct 509  Q
    |||||||||||||  |||| |||| |||| ||| ||||||||||||||||| | |||  |||||||||||||||||||||| ||||||| ||||||||||    
T  28964774 gagagaagagaatggagagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgct 28964873  T
Q  510 tgtagcataagttatctcactaactaacaa 539  Q
    ||||| | ||| ||||| |||||| |||||    
T  28964874 tgtagtacaagctatctaactaacaaacaa 28964903  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 412 - 541
Target Start/End: Original strand, 7043320 - 7043451
Alignment:
Q  412 agagaagagaataaagagtgtttccttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatata--acacttgct 509  Q
    ||||||||||||  |||| |||| |||| ||| ||||||||||||||  || ||| ||||||||||| ||||||||||||| | |||||  |||||||||    
T  7043320 agagaagagaatggagagagtttgcttgtaatatgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgct 7043419  T
Q  510 tgtagcataagttatctcactaactaacaagt 541  Q
    ||||||| ||| ||||| ||||||||||||||    
T  7043420 tgtagcacaagctatctaactaactaacaagt 7043451  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 543
Target Start/End: Complemental strand, 11494224 - 11494116
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagcct-tttataggcaaatataacacttgcttgtagcataagttatctcactaact 534  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||||| | ||||||||||  ||| |||||||||||||| ||  |||||||| ||||    
T  11494224 cttgcaatgcgaatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaact 11494125  T
Q  535 aacaagttt 543  Q
    ||| |||||    
T  11494124 aactagttt 11494116  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 543
Target Start/End: Complemental strand, 9881385 - 9881281
Alignment:
Q  440 caatgtgaatctcattaagaagttaatatacacattacaaagcc-ttttataggcaaatataacacttgcttgtagcataagttatctcactaactaaca 538  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||| || ||||||||||  |||||||| ||||||| | ||| || |||  ||||||||     
T  9881385 caatgtgaatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaact 9881286  T
Q  539 agttt 543  Q
    |||||    
T  9881285 agttt 9881281  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 32347602 - 32347670
Alignment:
Q  470 cacattacaaagccttttataggcaaatataacacttgcttgtagcataagttatctcactaactaacaa 539  Q
    |||| |||||||||||||||||||| | ||| ||||||||||||| | ||| ||||| ||||||||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaa 32347670  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 26905461 - 26905393
Alignment:
Q  470 cacattacaaagccttttataggcaaatataacacttgcttgtagcataagttatctcactaactaacaa 539  Q
    |||| |||||||||||||||||||| | ||| ||||||||| ||| | ||| ||||| ||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaacaa 26905393  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 39634388 - 39634347
Alignment:
Q  40 caagaggtaagtaaagtttgtgcaagaattgttctactcaag 81  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  39634388 caagaggtaagtaaagtttgaccaaaaattgttctactcaag 39634347  T

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Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 436 - 543
Target Start/End: Original strand, 26794256 - 26794364
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttt-tataggcaaatataacacttgcttgtagcataagttatctcactaact 534  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||  |||||||||||||||| | ||| || ||| ||||||    
T  26794256 cttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaact 26794355  T
Q  535 aacaagttt 543  Q
    ||| |||||    
T  26794356 aactagttt 26794364  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 412 - 533
Target Start/End: Complemental strand, 1663444 - 1663322
Alignment:
Q  412 agagaagagaataaagagtgtttccttgcaat-gtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatataacacttgctt 510  Q
    ||||||||||||  |||| |||| |||| ||| ||||||||||||||||| | ||| ||||| |||||||| |||| |||||||||||||||||||| ||    
T  1663444 agagaagagaatggagagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgttt 1663345  T
Q  511 gtagcataagttatctcactaac 533  Q
    |||||| ||| ||||| ||||||    
T  1663344 gtagcacaagctatctaactaac 1663322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 543
Target Start/End: Complemental strand, 51810665 - 51810557
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttt-tataggcaaatataacacttgcttgtagcataagttatctcactaact 534  Q
    |||||||||||||||||| | |||||| ||| || |||||||||||||||| ||||||||||  ||||| |||||||||||| ||| ||||||||| | |    
T  51810665 cttgcaatgtgaatctcaatgagaagtgaatttatacattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgatt 51810566  T
Q  535 aacaagttt 543  Q
    ||| |||||    
T  51810565 aactagttt 51810557  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 14234206 - 14234156
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttt 486  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  14234206 cttgcaatttgaatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 18953227 - 18953194
Alignment:
Q  40 caagaggtaagtaaagtttgtgcaagaattgttc 73  Q
    |||||||||||||||||||| |||||||||||||    
T  18953227 caagaggtaagtaaagtttgggcaagaattgttc 18953194  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 539
Target Start/End: Original strand, 59478 - 59580
Alignment:
Q  436 cttgcaatgtgaatctcattaagaagttaatatacacattacaaagccttttataggcaaatataacacttgcttgtagcataagttatctcactaacta 535  Q
    ||||||||||||||||||||||||  | ||  | |||| |||||||||||||||||||| | ||  ||||||||||||| | ||| ||| | ||||||||    
T  59478 cttgcaatgtgaatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaacta 59576  T
Q  536 acaa 539  Q
    ||||    
T  59577 acaa 59580  T

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