View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_10 (Length: 477)
Name: NF5256_low_10
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 43276683 - 43276989
Alignment:
| Q |
18 |
ctatgcatacaatttcctaaatgcttcaccaattctcaagatccttgtggatgagaaaacaaagttgttttagtcactatgatgtgttgttagagaagag |
117 |
Q |
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| T |
43276683 |
ctatgtatacaatttcctaaatgcttcaccaattctcaagatccttgtggatcagaaaacaaagttgttttagtcactatgatgtgttgttagagaagag |
43276782 |
T |
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| Q |
118 |
gagagaagttaaaaattcaatgtagtggtggtggttttggcataaatacagtttagtttttagagacaccatgatagtttatttcattttttcaaaagga |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43276783 |
gagaaaagttaaaaattcaatgtagtggtggtggttttggcataaataaagtttcgtttttagagacaccatgatagtttatttcattgtttttaaagga |
43276882 |
T |
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| Q |
218 |
atggtagtttaacattgctaatgatgtctagaatgaaaaattccgaaaacaattagaagcatacaacctcacatgtccatatgagaaacagagggcattt |
317 |
Q |
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| T |
43276883 |
atggtagtttaacattgttaatgatttctagaatgaaaattttcgaaaacaattagaatcatacaacctcacatgtccatatgagaaacagagggcattc |
43276982 |
T |
|
| Q |
318 |
aagaagg |
324 |
Q |
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||||||| |
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| T |
43276983 |
aagaagg |
43276989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 43277091 - 43277163
Alignment:
| Q |
375 |
caagtaaccggttaagatcattgaaaaagttggtgaggtggctgaatatgagtggagtgtgttagagagtgtg |
447 |
Q |
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| T |
43277091 |
caagtaaccggtcaagatcattgaaaaagttggtgaggtggctgaatatgagtggagtgtgttagagagtgtg |
43277163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 43276462 - 43276417
Alignment:
| Q |
393 |
cattgaaaaagttggtgaggtggctgaatatgagtggagtgtgtta |
438 |
Q |
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| T |
43276462 |
cattgaaaaagttggtgaggtggctgaatatgagtggagtgtgtta |
43276417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 7919756 - 7920061
Alignment:
| Q |
18 |
ctatgcatacaatttcctaaatgcttcaccaattctcaagatccttgtggatgagaaaacaaagttgttttagtcactatgatgtgttgttagagaagag |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7919756 |
ctatgtatacaatttcctaaatgcttcaccaattctcaagatccttgtggatcagaaaacaaagttgttttagtcactatgatgtgttgttagagaagag |
7919855 |
T |
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| Q |
118 |
gagagaagttaaaaattcaatgtagtggtggtggttttggcataaatacagtttagtttttagagacaccatgatagtttatttca-ttttttcaaaagg |
216 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
7919856 |
gagaaaagttaaaaattcaatgcagtggtggtggttttggcataaatacagtttcgtttttagagacaccatgatagtttatttcattttttttaaaaga |
7919955 |
T |
|
| Q |
217 |
aatggtagtttaacattgctaatgatgtctagaatgaaaaattccgaaaacaattagaagcatacaacctcacatgtccatatgagaaacagagggcatt |
316 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7919956 |
aatggtagtttaacattgttaatgatttctagaatgaaaaatttcgaaaacaattagaatcatacaacctcacatgtccatatgagaaacagagggcatt |
7920055 |
T |
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| Q |
317 |
taagaa |
322 |
Q |
| |
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||||| |
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| T |
7920056 |
caagaa |
7920061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 375 - 447
Target Start/End: Original strand, 7920165 - 7920237
Alignment:
| Q |
375 |
caagtaaccggttaagatcattgaaaaagttggtgaggtggctgaatatgagtggagtgtgttagagagtgtg |
447 |
Q |
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| T |
7920165 |
caagtaaccggtcaagatcattgaaaaagttggtgaggtggctgaatatgagtggagtgtgttagagagtgtg |
7920237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 7919535 - 7919490
Alignment:
| Q |
393 |
cattgaaaaagttggtgaggtggctgaatatgagtggagtgtgtta |
438 |
Q |
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| T |
7919535 |
cattgaaaaagttggtgaggtggctgaatatgagtggagtgtgtta |
7919490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 17958860 - 17959028
Alignment:
| Q |
30 |
tttcctaaatgcttcaccaattctcaagatccttgtggatgagaaaacaaagttgttttagtcactatgatgtgttgttagagaagaggagagaag-tta |
128 |
Q |
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||||||||||| | |||||||||||||| || ||||||| |||||||||| | ||||| ||||| |||| ||||||||||| ||||||||| ||| | |
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| T |
17958860 |
tttcctaaatgatccaccaattctcaagttcattgtggaggagaaaacaatgctgtttcagtcattatggtgtgttgttagcgaagaggagcaaagcaaa |
17958959 |
T |
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| Q |
129 |
aaaattcaatgtagtggtggtggttttggcataaatacagtttagtttttagagacaccatgatagttt |
197 |
Q |
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|||||||||| || ||||||||||||| |||||||||| |||||||||||| |||||| |||||| |
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| T |
17958960 |
aaaattcaatacagcggtggtggttttgccataaatacaaccgagtttttagagataccatggtagttt |
17959028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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