View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_11 (Length: 467)
Name: NF5256_low_11
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 45746014 - 45746443
Alignment:
| Q |
19 |
accaaaaagatcaagattgtagagaggtgccctaccacacacaaccttgaccttttttcatgtttgcgttcaagtgttgcaactaaggttttaaatcgcg |
118 |
Q |
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| T |
45746014 |
accaaaaagatcaagattgtagagaggtgccctaccacacacaaccttgacctttt-tcatgtttgcgttcaagtgttgcaactaaggttttaaatcgcg |
45746112 |
T |
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| Q |
119 |
gccgcaatgccgtgtcataatctttgatataataagagaattatgactaattaaaatatgttttatgcaggttgagggaattgaagactatgagatgtca |
218 |
Q |
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| T |
45746113 |
gccgcaatgccgtgtcataatctttgatataataagagaattatgactaattaaaatatgttttatgcaggttgagggaattgaagactatgagatgtca |
45746212 |
T |
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| Q |
219 |
tttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatcaatcataatcgtc |
318 |
Q |
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| T |
45746213 |
tttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaagtcaatcttatattatcaatcaatcataatcgtc |
45746312 |
T |
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| Q |
319 |
atttgtctaatgtnnnnnnnnnnnnnnnnttatatagannnnnnnggaggaggaaaaattatattgttaatcggtcattattgtcatattcaaaacgtta |
418 |
Q |
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| T |
45746313 |
atttgtctaatgt-----aaaaaaaaaaattatatagatttttttggaggaggaaaaattatattgttaatcggtcattattgtcatattcaaaacgtta |
45746407 |
T |
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| Q |
419 |
gatttcaatcataactagttttgtgatttgttgatg |
454 |
Q |
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| T |
45746408 |
gatttcaatcataactagttttgtgatttgttgatg |
45746443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 45734919 - 45735053
Alignment:
| Q |
185 |
gcaggttgagggaattgaagactatgagatgtcatttgcaaaatcaagggactctgtccaatctgaaggcagtactgattcttttgctttccctgtgtaa |
284 |
Q |
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| T |
45734919 |
gcaggttgagggaattgaagactatgagatgacatttgcagaatcaagggaatgtgtccaatctgaaggcagtactgattcttttgcttttcctgtgtaa |
45735018 |
T |
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| Q |
285 |
gtcaatcttatattatcaatcaatcataatcgtca |
319 |
Q |
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| T |
45735019 |
gtcaatcttatattatcaatcaatcctaatcgtca |
45735053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 45735104 - 45735180
Alignment:
| Q |
378 |
tatattgttaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgtgatttgttgatg |
454 |
Q |
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| T |
45735104 |
tatattattaatcggtcattattgtcatattcaaaacgttagatttcaatcataactagttttgggatttgttgatg |
45735180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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