View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_13 (Length: 437)
Name: NF5256_low_13
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 5655937 - 5656348
Alignment:
| Q |
18 |
ctccattccaagaagaatacagtatagtgatttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagtcct |
117 |
Q |
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| T |
5655937 |
ctccattccaagaagaatacagtatagtgatttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccaggaagaggcagagaagtcct |
5656036 |
T |
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| Q |
118 |
aataacagaagcaacacttgtagaagtgttgttaagatgnnnnnnncactcttttaaaccaggattgagtctaaccttctgcatgaattcatttgatcct |
217 |
Q |
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| T |
5656037 |
aataacagaagcaacacttgtagaagtgttgttaggatgaaaaaaacactcttttaaaccaggattgagtctaaccttctgcatgaattcatttgatcct |
5656136 |
T |
|
| Q |
218 |
tgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgannnnnnngatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5656137 |
tgacaaacttcccagtttatttcagcctcattttctcttccaaattcatcactacctccacatgatcctaatagtgttgatgaagttgatttttttgatg |
5656236 |
T |
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| Q |
318 |
aaatattgctcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctaggtatggatgatcattccaactgaacaaatcttt |
417 |
Q |
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| T |
5656237 |
aaatattactcatgtagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctagatatggatgatcattccagttgaacaaatcttt |
5656336 |
T |
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| Q |
418 |
tcttcctttgct |
429 |
Q |
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| T |
5656337 |
tcttcctttgct |
5656348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 47047714 - 47047669
Alignment:
| Q |
332 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcag |
377 |
Q |
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| T |
47047714 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcag |
47047669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 47047996 - 47047944
Alignment:
| Q |
47 |
atttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccagg |
99 |
Q |
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| T |
47047996 |
atttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccagg |
47047944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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