View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_14 (Length: 432)
Name: NF5256_low_14
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 12453992 - 12454394
Alignment:
| Q |
18 |
actaagaagggtaacaatgtgaagtttatcacaggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgt |
117 |
Q |
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| T |
12453992 |
actaagaagggtaacaatgtcaagtttatcacaggactgaattcatacaatggattgaaagcacagaacagcactgtgacatcactaggagttcctatgt |
12454091 |
T |
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| Q |
118 |
gcactgaacaagcttttgcaaaagtgacgagttcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcagg |
217 |
Q |
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| T |
12454092 |
gcactgaacaagcttttgcaaaagtgatgagttcattgaaatatccatcaaatggaggaagaagaggaggtgcaggttcttcaacatgtaatgctgcagg |
12454191 |
T |
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| Q |
218 |
tgagatttttcagattgcagctattatgaatggacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagct |
317 |
Q |
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| T |
12454192 |
tgagatttttcagattgcagctattatgaatggacttactcttgttggtgttgctgttggatttgttcttcttcgaattgaagctgctgttgaagaagct |
12454291 |
T |
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| Q |
318 |
gagtaagaatttttcatatatatttgtaataatgtaatgtaagtttatatcaggaagnnnnnnnntacaatttgtatgttatgtttgattcttgatgtga |
417 |
Q |
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| T |
12454292 |
gagtaagaatttttcatatatatttgtaataatgtaatgtaagtttatatcaggaag---aaaaatacaatttgtatgttatgtttgattcttgatgtga |
12454388 |
T |
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| Q |
418 |
tgatgt |
423 |
Q |
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| T |
12454389 |
tgatgt |
12454394 |
T |
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