View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256_low_22 (Length: 275)

Name: NF5256_low_22
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256_low_22
NF5256_low_22
[»] chr7 (7 HSPs)
chr7 (213-271)||(21851876-21851934)
chr7 (70-164)||(13420183-13420277)
chr7 (70-164)||(37350098-37350192)
chr7 (70-140)||(12180560-12180630)
chr7 (70-139)||(37348803-37348872)
chr7 (70-113)||(21017729-21017772)
chr7 (70-139)||(11671208-11671277)
[»] chr8 (6 HSPs)
chr8 (70-164)||(39885973-39886067)
chr8 (70-140)||(5462002-5462072)
chr8 (70-140)||(3157958-3158028)
chr8 (70-164)||(39884684-39884778)
chr8 (70-113)||(27824480-27824523)
chr8 (76-123)||(45437755-45437802)
[»] chr5 (3 HSPs)
chr5 (70-140)||(16310020-16310090)
chr5 (70-140)||(27756706-27756776)
chr5 (70-140)||(16308634-16308704)
[»] chr2 (9 HSPs)
chr2 (70-140)||(44465011-44465081)
chr2 (70-141)||(15346932-15347003)
chr2 (70-141)||(38729982-38730053)
chr2 (86-149)||(44421254-44421317)
chr2 (70-140)||(16142294-16142364)
chr2 (70-140)||(38728252-38728322)
chr2 (68-121)||(169225-169278)
chr2 (70-139)||(472788-472857)
chr2 (70-139)||(34591792-34591861)
[»] chr6 (3 HSPs)
chr6 (70-139)||(4296328-4296397)
chr6 (70-170)||(10711807-10711907)
chr6 (70-116)||(10699298-10699344)
[»] chr3 (3 HSPs)
chr3 (70-139)||(30700364-30700433)
chr3 (70-114)||(41879992-41880036)
chr3 (70-139)||(22942406-22942475)
[»] chr4 (7 HSPs)
chr4 (70-154)||(22307739-22307823)
chr4 (70-140)||(42889732-42889801)
chr4 (70-149)||(54536608-54536687)
chr4 (70-164)||(22309035-22309129)
chr4 (75-139)||(44445048-44445112)
chr4 (69-116)||(33607535-33607582)
chr4 (80-140)||(25351721-25351781)
[»] chr1 (8 HSPs)
chr1 (70-141)||(7185776-7185847)
chr1 (70-154)||(18309153-18309237)
chr1 (70-140)||(50316971-50317041)
chr1 (70-139)||(7001265-7001334)
chr1 (70-139)||(13209643-13209712)
chr1 (68-139)||(3894084-3894155)
chr1 (70-140)||(24438868-24438938)
chr1 (86-154)||(35973181-35973249)
[»] scaffold0288 (1 HSPs)
scaffold0288 (73-164)||(19543-19633)
[»] scaffold0672 (1 HSPs)
scaffold0672 (70-165)||(425-520)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 21851934 - 21851876
Alignment:
Q  213 tatttattgttttttattcatatttataatttcaaattatcatagtactaatattcatc 271  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  21851934 tatttattgttttttattcatatttataatttcacattatcatagtactaatatgcatc 21851876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 13420277 - 13420183
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    ||||||||||| || |||||||||||| ||||||| |||| ||||||||||||| ||||  |||||||||| | |||||| |||| |||||||||    
T  13420277 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatccgttacaaaaacgtctatgtggcaaacggatgatga 13420183  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 37350192 - 37350098
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    ||||||||||| || | |||||||||| ||||||| |||| ||||||||||||| ||||| |||||||||| | |||||| |||| ||| |||||    
T  37350192 ttctaaaacaacccctataagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 37350098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 12180630 - 12180560
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| ||||||||| |||| |||||||||| |||||| ||||||  |||| ||||||||||    
T  12180630 ttctaaaacaaaccctgtaagttacaaacgttttgattttcgtccctcccgtcagcatctgttacaaaaac 12180560  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 37348803 - 37348872
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    ||||||||||| || |||||||||||||| ||||| |||| |||| ||||||||  |||| |||||||||    
T  37348803 ttctaaaacaatccttgtaagttataaacgttttggttttagtccatgccgtcattatctgttacaaaaa 37348872  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 21017772 - 21017729
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtc 113  Q
    ||||||||||| || |||||||||||||||||||| ||||||||    
T  21017772 ttctaaaacaacccctgtaagttataaacattttggttttggtc 21017729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 11671277 - 11671208
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||||||| ||||||||| |||  |||||||||| ||||||  |||||  |||| |||||||||    
T  11671277 ttctaaaacaaaccctgtaagttacaaatgttttgattttcgtccctctcgtcagcatctgttacaaaaa 11671208  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 39886067 - 39885973
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    ||||||||||| || |||||||||||| ||||||| |||| ||||||||||||| ||||| |||||||||| | |||||| |||| ||| |||||    
T  39886067 ttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaacggaggatga 39885973  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 5462002 - 5462072
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||  |||| ||||||||||    
T  5462002 ttctaaaacagaccctgtaatttataaacattttgcttttggtccctgccgtcagcatctgttacaaaaac 5462072  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 3158028 - 3157958
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| |||||||||||||||||||| ||| ||||||||||||||  |||| ||||| ||||    
T  3158028 ttctaaaacagaccctgtaagttataaacattttgctttcggtccctgccgtcagcatctgttacacaaac 3157958  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 39884684 - 39884778
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    |||||||| || || |||||||||||| ||||||| |||| ||||||||| ||| ||||| |||||||||| | |||||| |||| ||| |||||    
T  39884684 ttctaaaataacccttgtaagttataagcattttggttttagtccctgccttcataatctgttacaaaaacgtctatgtggcaaacggaggatga 39884778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 27824523 - 27824480
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtc 113  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  27824523 ttctaaaacaaaccctataagttataaacgttttgattttggtc 27824480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 45437755 - 45437802
Alignment:
Q  76 aacaaaccgtgtaagttataaacattttgattttggtccctgccgtca 123  Q
    |||||||| ||||| |||||||||||||| ||||||||| ||||||||    
T  45437755 aacaaaccttgtaaattataaacattttggttttggtccatgccgtca 45437802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 16310090 - 16310020
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||    
T  16310090 ttctaaaacagaccttgtaagttataaacattttgcttttggtccctgccgtcagcatctgttacaaaaac 16310020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 27756776 - 27756706
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||  || | ||||||||||    
T  27756776 ttctaaaacaaaccctgtaaattataaacattttgcttttggtccctgccgtcagcatttgttacaaaaac 27756706  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 16308634 - 16308704
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| |||||||||||| | || || ||||||||||| ||||||  |||| ||||||||||    
T  16308634 ttctaaaacagaccctgtaagttataagccttgtgcttttggtccctaccgtcatcatctgttacaaaaac 16308704  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 44465081 - 44465011
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||    
T  44465081 ttctaaaacagaccttgtaagttataaacattttgcttttggtccctgccgtcagtatctgttacaaaaac 44465011  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 15346932 - 15347003
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaaca 141  Q
    ||||||||||| || ||||| |||||||| ||||| ||||||||| |||||||| ||||| |||||||||||    
T  15346932 ttctaaaacaacccttgtaaattataaacgttttgcttttggtccttgccgtcataatctgttacaaaaaca 15347003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 38730053 - 38729982
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaaca 141  Q
    |||||||||||||| ||||||||| |||| |||||||||| ||||||||||| |   ||| |||||||||||    
T  38730053 ttctaaaacaaaccctgtaagttacaaaccttttgattttcgtccctgccgttagcctctgttacaaaaaca 38729982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 44421317 - 44421254
Alignment:
Q  86 gtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtg 149  Q
    ||||||||||||| ||||| |||||||| |||||||||| |||| |||||||||| | ||||||    
T  44421317 gtaagttataaacgttttgcttttggtctctgccgtcaccatctgttacaaaaacgtttatgtg 44421254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 16142294 - 16142364
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| ||||||||| |||| |||||||||| | |||| ||||||  |||| ||||||||||    
T  16142294 ttctaaaacaaaccctgtaagttacaaacgttttgattttcggccctcccgtcagcatctgttacaaaaac 16142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 38728252 - 38728322
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| || |||||| |||| |||||||||| |||||| |||||| ||||| |||| |||||    
T  38728252 ttctaaaacaaaccctgcaagttacaaacgttttgattttcgtccctcccgtcataatctgttacgaaaac 38728322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 169278 - 169225
Alignment:
Q  68 ctttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgt 121  Q
    |||||||||||||  | |||||||||||||| ||||| |||||||| |||||||    
T  169278 ctttctaaaacaactcttgtaagttataaacgttttggttttggtctctgccgt 169225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 472788 - 472857
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||||  | |||||||||||||| ||||| ||||||||||| | ||||  |||| |||||||||    
T  472788 ttctaaaacaactcatgtaagttataaacgttttgtttttggtccctacagtcatcatctgttacaaaaa 472857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 34591792 - 34591861
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||||||  | |||||||||||| ||||| |||||||||||| ||||   || |||||||||||    
T  34591792 ttctaaaacaaactatttaagttataaacgttttgcttttggtccctgtcgtcctcatatattacaaaaa 34591861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 4296397 - 4296328
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||  ||||||||||||||    
T  4296397 ttctaaaataaaccgtgtaagttataaacgttttggttttggtccatgccgtcatcatctattacaaaaa 4296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 10711907 - 10711807
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatgatctgg 169  Q
    ||||||||||| || ||||| |||||||  |||||  |||| | ||||||||||  |||||||||||||| || |||||| ||||| || |||||| |||    
T  10711907 ttctaaaacaacccatgtaaattataaatgttttggctttgattcctgccgtcatcatctattacaaaaatatttatgtggcaaatagaggatgatgtgg 10711808  T
Q  170 c 170  Q
    |    
T  10711807 c 10711807  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 10699298 - 10699344
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccct 116  Q
    ||||||||||| |  |||||||||||||| |||||||||||||||||    
T  10699298 ttctaaaacaacctctgtaagttataaacgttttgattttggtccct 10699344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 30700364 - 30700433
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||  |||| |||||||||    
T  30700364 ttctaaaacacaccctgtaagttataaacattttgcttttggtccctgccgtcagcatctgttacaaaaa 30700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 41879992 - 41880036
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtcc 114  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||    
T  41879992 ttctaaaacaaaccttgtaagttataaacgttttgattttcgtcc 41880036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 22942406 - 22942475
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    ||||||||||| |  |||||||||||||| ||||| ||||||||||  ||||||  |||| |||||||||    
T  22942406 ttctaaaacaacctatgtaagttataaacgttttggttttggtcccatccgtcatcatctgttacaaaaa 22942475  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 22307739 - 22307823
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaa 154  Q
    ||||||||||| || |||||||||||| ||||||| |||| ||||||||||||| ||||| |||||||||| | |||||| ||||    
T  22307739 ttctaaaacaacccttgtaagttataagcattttggttttagtccctgccgtcataatctgttacaaaaacgtctatgtggcaaa 22307823  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 42889801 - 42889732
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  42889801 ttctaaaacagaccatgtaagttataaacattttgcttttggtccctgccgtca-actctgttacaaaaac 42889732  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 54536687 - 54536608
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtg 149  Q
    |||||||||| ||| ||||| |||||||| ||||| ||||||||||||| ||||| |||| |||||||||| | ||||||    
T  54536687 ttctaaaacagaccatgtaaattataaacgttttgcttttggtccctgctgtcaccatctgttacaaaaacgtttatgtg 54536608  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 22309129 - 22309035
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    ||||||||||| || |||||||||||| ||||||| |||| |||| |||||||| ||||  |||||||||| | |||||| |||| ||| |||||    
T  22309129 ttctaaaacaacccctgtaagttataagcattttggttttagtccgtgccgtcataatcagttacaaaaacgtctatgtggcaaacggaggatga 22309035  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 44445112 - 44445048
Alignment:
Q  75 aaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    ||||||||| |||||||||||||| |||| | |||||||| | ||||||| |||| |||||||||    
T  44445112 aaacaaaccttgtaagttataaacttttttactttggtccttaccgtcaccatctgttacaaaaa 44445048  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 33607535 - 33607582
Alignment:
Q  69 tttctaaaacaaaccgtgtaagttataaacattttgattttggtccct 116  Q
    ||||||||||||||| |||||||| ||||||||||| |||| ||||||    
T  33607535 tttctaaaacaaaccctgtaagttgtaaacattttggttttagtccct 33607582  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 25351781 - 25351721
Alignment:
Q  80 aaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||| |||||||||||||| ||||| ||||||||||||| ||||  |||  ||||||||||    
T  25351781 aaccctgtaagttataaacgttttggttttggtccctgctgtcatcatcagttacaaaaac 25351721  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 7185847 - 7185776
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaaca 141  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||  |||| |||||||||||    
T  7185847 ttctaaaacagaccctgtaagttataaacattttgcttttggtcccttccgtcagcatctgttacaaaaaca 7185776  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 18309153 - 18309237
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaa 154  Q
    ||||||||||| || |||||||||||||| ||||| ||||||| |||| |||||   |||||||||||||| | |||||||||||    
T  18309153 ttctaaaacaatccttgtaagttataaacgttttggttttggttcctgtcgtcatcgtctattacaaaaacgtatatgtgacaaa 18309237  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 50317041 - 50316971
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| ||||||||| |||| |||||||||| |||||| ||||||  |||| ||||||||||    
T  50317041 ttctaaaacaaaccctgtaagttacaaacgttttgattttcgtccctcccgtcagcatctgttacaaaaac 50316971  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 7001265 - 7001334
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||||||  |||||||||||||| |||| ||||||||| ||| |||||  ||||||||||||||    
T  7001265 ttctaaaacaaacattgtaagttataaacgttttaattttggtctctgtcgtcatcatctattacaaaaa 7001334  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 13209643 - 13209712
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||| | ||| |||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  13209643 ttctaaaatagaccctgtaagatataaacgttttgcttttggtccctgccgtcaccatctgttacaaaaa 13209712  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 3894155 - 3894084
Alignment:
Q  68 ctttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaa 139  Q
    |||||||||| || || ||||||| |||||||||||| ||||||||||||| ||||  |||| |||||||||    
T  3894155 ctttctaaaataacccttgtaagtaataaacattttgcttttggtccctgctgtcatcatctgttacaaaaa 3894084  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 24438938 - 24438868
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaac 140  Q
    |||||||||||||| ||||||||| |||| |||||||||| |||||  ||||||  |||| ||||||||||    
T  24438938 ttctaaaacaaaccctgtaagttacaaacgttttgattttcgtcccacccgtcagcatctgttacaaaaac 24438868  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 35973249 - 35973181
Alignment:
Q  86 gtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaa 154  Q
    ||||||||||||| ||||| ||||||||  ||||||||| |||| |||||||||| | |||||| ||||    
T  35973249 gtaagttataaacgttttggttttggtcattgccgtcaccatctgttacaaaaacgtctatgtggcaaa 35973181  T

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Target: scaffold0288 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 19543 - 19633
Alignment:
Q  73 taaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatga 164  Q
    ||||||||||| ||||||||||||  | |||| ||||||||  ||||||||||||||||||||||||| | |||||| ||||| || |||||    
T  19543 taaaacaaaccttgtaagttataat-agtttggttttggtcattgccgtcacaatctattacaaaaacgtctatgtggcaaatagaggatga 19633  T

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Target: scaffold0672 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 520 - 425
Alignment:
Q  70 ttctaaaacaaaccgtgtaagttataaacattttgattttggtccctgccgtcacaatctattacaaaaacatgtatgtgacaaatggatgatgat 165  Q
    |||||||||| ||| |||||||||||||| ||||| ||||||||||  || |||  |||| || | ||||| ||||||||  ||||||| ||||||    
T  520 ttctaaaacagaccctgtaagttataaacgttttggttttggtcccaaccatcatcatctgttgccaaaacgtgtatgtgggaaatggaggatgat 425  T

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