View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_25 (Length: 251)
Name: NF5256_low_25
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 15801059 - 15801285
Alignment:
| Q |
19 |
ccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattt |
118 |
Q |
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| T |
15801059 |
ccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattt |
15801158 |
T |
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| Q |
119 |
acaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15801159 |
acaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaa |
15801258 |
T |
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| Q |
219 |
cgggcactcgttatacttgatgatgtc |
245 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
15801259 |
cgggcacttgttatacttgatgatgtc |
15801285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 3312925 - 3313150
Alignment:
| Q |
19 |
ccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattt |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |
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| T |
3312925 |
ccaaagtcatctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagagaagtttgggagaaagataggggtagaatcgattt |
3313024 |
T |
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| Q |
119 |
acaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactttgcacgaaa |
218 |
Q |
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| T |
3313025 |
acaagaacaacttctttcagatatcctcaaaacaaggaagataaaggtgcatagtgttgagtttggaaaagctatgattaaggaacgacttgtcacaaaa |
3313124 |
T |
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| Q |
219 |
cgggcactcgttatacttgatgatgt |
244 |
Q |
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|||||||| ||| ||||||||||||| |
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| T |
3313125 |
cgggcacttgttgtacttgatgatgt |
3313150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 3393585 - 3393395
Alignment:
| Q |
19 |
ccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattt |
118 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| ||||| |
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| T |
3393585 |
ccaaagtcatatacaatgatctttgttatgaatttgaagatcaaagcttcgttgctaatattagagaagtttgggagaaagataggggcagaatcgattt |
3393486 |
T |
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| Q |
119 |
acaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaatgaacgactt |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||| ||||||||||||||||| |||||||| |
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| T |
3393485 |
acaagaacaacttctttcagatatcctgaaaacaagaaagataaaggtgcttagtgttgagcaaggaaaagctatgatcaagcaacgactt |
3393395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 3362298 - 3362478
Alignment:
| Q |
19 |
ccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagggggcaaattgattt |
118 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |
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| T |
3362298 |
ccaaagtcatctacaatgatctttgttatgaatttgaaaatcaaagcttccttgctaatattagagaagtttgggagaaagataggggcagaatcgattt |
3362397 |
T |
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| Q |
119 |
acaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataatgttgagtggggaaaagctatgatcaa |
199 |
Q |
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|||||||||| |||||||||||||||| ||||||||||| ||||||||| || ||||||| |||||| |||||||||| |
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| T |
3362398 |
acaagaacaatttctttcagatatcctcaaaacaagaaagataaaggtgcttagtgttgagcaaggaaaaactatgatcaa |
3362478 |
T |
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