View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_30 (Length: 231)
Name: NF5256_low_30
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 1868423 - 1868221
Alignment:
| Q |
16 |
agaacaactacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaattcctttga |
115 |
Q |
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| T |
1868423 |
agaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttga |
1868324 |
T |
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| Q |
116 |
aaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagcactttgagt |
215 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1868323 |
aaacggtaccaaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagcactttgagt |
1868224 |
T |
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| Q |
216 |
tga |
218 |
Q |
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||| |
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| T |
1868223 |
tga |
1868221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 1842806 - 1842612
Alignment:
| Q |
24 |
tacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaattcctttgaaaacagta |
123 |
Q |
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| T |
1842806 |
tacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcctttgtaaacagta |
1842707 |
T |
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| Q |
124 |
ccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagcactttgagttga |
218 |
Q |
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| T |
1842706 |
ccaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatattttagtgctttcagttga |
1842612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 9162133 - 9162227
Alignment:
| Q |
108 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattt |
202 |
Q |
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| T |
9162133 |
tcctttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatattt |
9162227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 9219039 - 9219104
Alignment:
| Q |
105 |
aattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
170 |
Q |
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| T |
9219039 |
aattcctttgaaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggt |
9219104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 9156221 - 9156283
Alignment:
| Q |
108 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
170 |
Q |
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| T |
9156221 |
tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggt |
9156283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 9170959 - 9171021
Alignment:
| Q |
108 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
170 |
Q |
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| T |
9170959 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt |
9171021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 9178941 - 9179003
Alignment:
| Q |
108 |
tcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctcgtcgaagtttttggt |
170 |
Q |
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| T |
9178941 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggt |
9179003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 9229920 - 9229974
Alignment:
| Q |
101 |
ctagaattcctttgaaaacagtaccaaaaccacctttgccaatgattaaactctc |
155 |
Q |
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| T |
9229920 |
ctagaattcctttgtaaaccgtaccgaaacctcctctgccaattattaaactctc |
9229974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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