View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5256_low_32 (Length: 229)
Name: NF5256_low_32
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 2933936 - 2934134
Alignment:
| Q |
17 |
atgaagggtaacaaggaacaagtagaggttgagtttgactaaagccaaaactacgtcgttatggatcaatttaaaaaagaatgggaaaaacatgaggttc |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
2933936 |
atgaagggtaagaaggaacaagtagaggttgagtttgactaaagccaaaactacggcgttatggatcaattaaaaaaagaatggcaaaaacatgaggttc |
2934035 |
T |
|
| Q |
117 |
aaaacaatgtcattttgttcttcatttttaataatttcaatcaaattgtgggctcccaattaataaactactcattttagagtttccatcatccaaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2934036 |
aaaacaatgtcattttgttcttcatttttaataacttcaatcaaattgtgggctcccaattaataaactactcattttagagtttccatcatccaaaac |
2934134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 13638256 - 13638215
Alignment:
| Q |
142 |
ttttaataatttcaatcaaattgtgggctcccaattaataaa |
183 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13638256 |
ttttaataatttcaatcaaacggtgggctcccaattaataaa |
13638215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University