View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256_low_4 (Length: 552)

Name: NF5256_low_4
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256_low_4
NF5256_low_4
[»] chr1 (6 HSPs)
chr1 (465-537)||(6154344-6154416)
chr1 (246-301)||(18431702-18431757)
chr1 (243-301)||(6154642-6154700)
chr1 (397-468)||(18431528-18431607)
chr1 (472-541)||(22787946-22788019)
chr1 (431-468)||(22788280-22788317)
[»] chr5 (7 HSPs)
chr5 (465-537)||(424261-424333)
chr5 (242-350)||(424773-424882)
chr5 (386-437)||(424691-424742)
chr5 (388-437)||(18113686-18113735)
chr5 (243-299)||(18113827-18113883)
chr5 (509-539)||(18108587-18108617)
chr5 (468-504)||(18113296-18113332)
[»] chr3 (6 HSPs)
chr3 (472-542)||(52118779-52118853)
chr3 (472-542)||(26557106-26557180)
chr3 (465-504)||(39163818-39163857)
chr3 (431-468)||(26555662-26555699)
chr3 (431-464)||(52118481-52118514)
chr3 (260-300)||(26555493-26555533)
[»] chr6 (5 HSPs)
chr6 (246-301)||(5014160-5014215)
chr6 (397-468)||(5013975-5014054)
chr6 (465-511)||(14434623-14434669)
chr6 (431-468)||(16693155-16693192)
chr6 (465-546)||(20737754-20737835)
[»] chr2 (2 HSPs)
chr2 (393-468)||(16916261-16916347)
chr2 (246-301)||(16916433-16916488)
[»] chr8 (3 HSPs)
chr8 (431-468)||(28535349-28535386)
chr8 (465-504)||(37173581-37173620)
chr8 (465-504)||(37177872-37177911)
[»] chr7 (1 HSPs)
chr7 (397-437)||(46437457-46437497)
[»] chr4 (1 HSPs)
chr4 (246-298)||(8903210-8903262)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 6154416 - 6154344
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 537  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6154416 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcacgttatttgttc 6154344  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 18431757 - 18431702
Alignment:
Q  246 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 301  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||    
T  18431757 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaa 18431702  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 6154700 - 6154642
Alignment:
Q  243 catgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 301  Q
    ||||||||||||||| |||||||||| |||| ||||||| |||||| ||||||||||||    
T  6154700 catgggcggatgtacgttgaaacatggtgtgacagctgcaacaccagattctagcctaa 6154642  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 18431607 - 18431528
Alignment:
Q  397 ttcttctcttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 468  Q
    |||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||  |||||||||    
T  18431607 ttctcctcttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 18431528  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 541
Target Start/End: Complemental strand, 22788019 - 22787946
Alignment:
Q  472 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttccttt 541  Q
    ||||||||||||||| ||||||||||||| |    || |||||||||||||||| ||| |||||||||||||||    
T  22788019 tattgacatggtactgcaatgaaaagaaaaattacttactgccacattctaattttcatgttatttgttccttt 22787946  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 22788317 - 22788280
Alignment:
Q  431 tcttcttacaaatcacaattcacaatctcctttcttct 468  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  22788317 tcttctcacaaatcacaattcacaatcttctttcttct 22788280  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 424333 - 424261
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 537  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  424333 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcgcgttatctgttc 424261  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 350
Target Start/End: Complemental strand, 424882 - 424773
Alignment:
Q  242 acatgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa-nnnnnnnnnatatacataataacataagacacgggaaag 340  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||          |||| |||||||||||||| || |||||||    
T  424882 acatgggcggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaatttttgttttatatgcataataacataaggcaggggaaag 424783  T
Q  341 tggaaattgg 350  Q
    ||||||||||    
T  424782 tggaaattgg 424773  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 424742 - 424691
Alignment:
Q  386 gcgttgtttgtttcttctcttctctactctcacaaacaatcggtttcttctt 437  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  424742 gcgttgtttgtttcttctcttctcaactctcacaaacaatcggtttcttctt 424691  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 18113735 - 18113686
Alignment:
Q  388 gttgtttgtttcttctcttctctactctcacaaacaatcggtttcttctt 437  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18113735 gttgtttgtttcttctcttctctactctcacaaacaatctgtttcttctt 18113686  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 18113883 - 18113827
Alignment:
Q  243 catgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcct 299  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  18113883 catgggcggatgtacattgaaacatggtgtggcagttgccacaccagattctagcct 18113827  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Complemental strand, 18108617 - 18108587
Alignment:
Q  509 ccacattctaattctcacgttatttgttcct 539  Q
    |||||||||||||||||||||||||||||||    
T  18108617 ccacattctaattctcacgttatttgttcct 18108587  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 18113332 - 18113296
Alignment:
Q  468 tatgtattgacatggtactacaatgaaaagaaacatt 504  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  18113332 tatgtattgacatggtactgcaatgaaaagatacatt 18113296  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 52118779 - 52118853
Alignment:
Q  472 tattgacatggtactacaatgaaaagaaacattgctg----ccacattctaattctcacgttatttgttcctttg 542  Q
    ||||||||||||||| ||||||||||||| ||| ||     ||||||||||||||||| ||||||||||||||||    
T  52118779 tattgacatggtactgcaatgaaaagaaaaattacttactaccacattctaattctcatgttatttgttcctttg 52118853  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 542
Target Start/End: Original strand, 26557106 - 26557180
Alignment:
Q  472 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttcctttg 542  Q
    ||||||||||||||| || |||||||||| |    || |||||||||||||||| ||| ||||||||||||||||    
T  26557106 tattgacatggtactgcagtgaaaagaaaaattacttactgccacattctaattttcatgttatttgttcctttg 26557180  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 39163857 - 39163818
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacatt 504  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  39163857 ttctatgtattgacaaggaactacaatgaaaagaaacatt 39163818  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 26555662 - 26555699
Alignment:
Q  431 tcttcttacaaatcacaattcacaatctcctttcttct 468  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26555662 tcttctcacaaatcacaattcacaatcttctttcttct 26555699  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Original strand, 52118481 - 52118514
Alignment:
Q  431 tcttcttacaaatcacaattcacaatctcctttc 464  Q
    |||||| |||||||||||||||||||||||||||    
T  52118481 tcttctcacaaatcacaattcacaatctcctttc 52118514  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 26555493 - 26555533
Alignment:
Q  260 tgaaacatgatgtggcagctgccacaccatattctagccta 300  Q
    ||||||||| ||||||||||||||||||| ||||| |||||    
T  26555493 tgaaacatggtgtggcagctgccacaccagattcttgccta 26555533  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 5014215 - 5014160
Alignment:
Q  246 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 301  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||    
T  5014215 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 5014160  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 468
Target Start/End: Complemental strand, 5014054 - 5013975
Alignment:
Q  397 ttcttctcttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 468  Q
    |||| |||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||  |||||||||    
T  5014054 ttctcctcttctctactctcacaaacaatcgatttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 5013975  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 511
Target Start/End: Original strand, 14434623 - 14434669
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacattgctgcca 511  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  14434623 ttctatgtattgacaaggcactgcaatgaaaagaaacattgctgcca 14434669  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 16693155 - 16693192
Alignment:
Q  431 tcttcttacaaatcacaattcacaatctcctttcttct 468  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16693155 tcttctcacaaatcacaattcacaatctcctttcttct 16693192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 546
Target Start/End: Complemental strand, 20737835 - 20737754
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttcctttgcttc 546  Q
    ||||||||||||| ||  || | |||||||||||||||||  |||||| |||||||||||||  ||| ||||||||| ||||    
T  20737835 ttctatgtattgaaatattattgcaatgaaaagaaacattattgccactttctaattctcacagtatatgttccttttcttc 20737754  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 16916347 - 16916261
Alignment:
Q  393 ttgtttcttctc---ttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 468  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||        ||||||||||||||||||||  |||||||||    
T  16916347 ttgtttcttctccttttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 16916261  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 16916488 - 16916433
Alignment:
Q  246 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 301  Q
    ||||||||||| | ||||||||| |||| |||||||||||||| ||||||||||||    
T  16916488 gggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaa 16916433  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 28535349 - 28535386
Alignment:
Q  431 tcttcttacaaatcacaattcacaatctcctttcttct 468  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28535349 tcttctcacaaatcacaattcacaatctcctttcttct 28535386  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 37173620 - 37173581
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacatt 504  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37173620 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37173581  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 37177911 - 37177872
Alignment:
Q  465 ttctatgtattgacatggtactacaatgaaaagaaacatt 504  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37177911 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37177872  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 46437457 - 46437497
Alignment:
Q  397 ttcttctcttctctactctcacaaacaatcggtttcttctt 437  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  46437457 ttctcctcttctttactctcacaaacaatcggtttcttctt 46437497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 8903210 - 8903262
Alignment:
Q  246 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcc 298  Q
    |||||||||||||||| | |||| |||||||||| |||||||| |||||||||    
T  8903210 gggcggatgtacattgtagcatggtgtggcagctaccacaccagattctagcc 8903262  T

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