View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5256_low_5 (Length: 548)

Name: NF5256_low_5
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5256_low_5
NF5256_low_5
[»] scaffold0037 (4 HSPs)
scaffold0037 (168-529)||(32361-32725)
scaffold0037 (174-529)||(102828-103203)
scaffold0037 (17-152)||(32754-32886)
scaffold0037 (18-152)||(102663-102794)
[»] chr6 (12 HSPs)
chr6 (168-341)||(10427124-10427297)
chr6 (374-525)||(10426956-10427125)
chr6 (47-137)||(10427297-10427389)
chr6 (252-293)||(6299513-6299554)
chr6 (252-293)||(6306323-6306364)
chr6 (245-293)||(19602198-19602246)
chr6 (245-294)||(30866160-30866209)
chr6 (252-292)||(2140499-2140539)
chr6 (426-458)||(7891331-7891363)
chr6 (203-243)||(8954836-8954876)
chr6 (203-243)||(8965837-8965877)
chr6 (250-286)||(29711261-29711297)
[»] chr8 (5 HSPs)
chr8 (252-293)||(9936815-9936856)
chr8 (250-293)||(29519194-29519237)
chr8 (246-296)||(43551875-43551925)
chr8 (249-293)||(27733845-27733889)
chr8 (258-294)||(34201062-34201098)
[»] chr3 (1 HSPs)
chr3 (256-293)||(40150588-40150625)
[»] chr2 (5 HSPs)
chr2 (250-293)||(18570971-18571014)
chr2 (256-294)||(40681987-40682025)
chr2 (256-293)||(31026700-31026737)
chr2 (258-294)||(12933752-12933788)
chr2 (249-293)||(16630793-16630837)
[»] chr1 (4 HSPs)
chr1 (250-293)||(3921666-3921709)
chr1 (245-292)||(42325554-42325601)
chr1 (257-294)||(40747789-40747826)
chr1 (257-293)||(11571591-11571627)
[»] scaffold0022 (1 HSPs)
scaffold0022 (256-294)||(99898-99936)
[»] chr5 (5 HSPs)
chr5 (256-294)||(32630751-32630789)
chr5 (256-293)||(11596472-11596509)
chr5 (245-293)||(2335612-2335660)
chr5 (258-294)||(25863211-25863247)
chr5 (245-293)||(43208291-43208339)
[»] scaffold0316 (1 HSPs)
scaffold0316 (252-293)||(16137-16178)
[»] chr7 (4 HSPs)
chr7 (260-293)||(30516374-30516407)
chr7 (256-293)||(38134423-38134460)
chr7 (246-294)||(12278830-12278878)
chr7 (257-293)||(44172907-44172943)
[»] chr4 (3 HSPs)
chr4 (256-293)||(18513258-18513295)
chr4 (257-293)||(5654608-5654644)
chr4 (257-293)||(10546154-10546190)


Alignment Details
Target: scaffold0037 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 168 - 529
Target Start/End: Complemental strand, 32725 - 32361
Alignment:
Q  168 acacctacacgttttcgatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacaccaacatcgataataattt 267  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  32725 acaccgacacgttctcgatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacatcaacattgataataattt 32626  T
Q  268 tagaaaatgatataattcaatgtaatttttatgttctatcagaaatttcgatgctactgagctcggcctctatttacctgttgtgtaannnnnnnnnagt 367  Q
     |||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||         |||    
T  32625 gagaaaatgatgtaatttaatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcggcctctatttacctgttgggtaatttttttttagt 32526  T
Q  368 tttctgttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcaagggaaatcatcttagaaagattgaagttgaacaagagtgt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32525 tttctgttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcaagggaaatcatcttagaaagattgaagttgaacaagagtgt 32426  T
Q  468 aaagttagggtcctgtctcgttattttcataaagtcgaaga---taaagtggagcatattccaca 529  Q
    |||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||    
T  32425 aaagttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccaca 32361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 174 - 529
Target Start/End: Original strand, 102828 - 103203
Alignment:
Q  174 acacgttttcgatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacaccaacatcgataataattttagaaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  102828 acacgttttcgatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacaccaacatcgataataatttgagaaa 102927  T
Q  274 atgatataattcaatgtaatttttatgttctatcagaaatttcgatgctactgagctcggcctctatttacctgttgtgtaa--nnnnnnnnnagttttc 371  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||           |||||||    
T  102928 atgatataattcaatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcggcctctatttacctgttgggtaatttttttttttagttttc 103027  T
Q  372 tgttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttc---------------aagggaaatcatcttagaaagattgaagttg 456  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||               |||||||||||||||||||||||||||||||    
T  103028 tgttacacagggagaatggaaagtaagcattacttgaatgtcgacaatcctttcagcaagtgtgcgtgtaagggaaatcatcttagaaagattgaagttg 103127  T
Q  457 aacaagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaaga---taaagtggagcatattccaca 529  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||    
T  103128 aacaagagtgtaaagttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccaca 103203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 32886 - 32754
Alignment:
Q  17 agtgacaggaactttccggtggtggtcaggtcaggtagtgatttctctctgatgtttttctttctatttttatcccttattcttcacttattacatttcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||    
T  32886 agtgacaggaactttccggtggtggtcaggtcaggtagtgatttctctctgatgtttttctttctatttttatccc---ttcttcagttattacatttcc 32790  T
Q  117 gacccatttatcaaacactgatacgaaataacttat 152  Q
    ||||||||||||||||||||||||||||||||||||    
T  32789 gacccatttatcaaacactgatacgaaataacttat 32754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 102663 - 102794
Alignment:
Q  18 gtgacaggaactttccggtggtggtcaggtcaggtagtgatttctctctgatgtttttctttctatttttatcccttattcttcacttattacatttccg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||    
T  102663 gtgacaggaactttccggtggtggtcaggtcaggtagtgatttctctctgatgtttttctttctatttttatccc---ttcttcagttattacatttccg 102759  T
Q  118 acccatttatcaaacactgatacgaaataacttat 152  Q
    |||||||||||||||||||||||||||||||||||    
T  102760 acccatttatcaaacactgatacgaaataacttat 102794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 168 - 341
Target Start/End: Complemental strand, 10427297 - 10427124
Alignment:
Q  168 acacctacacgttttcgatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacaccaacatcgataataattt 267  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10427297 acacctacacgttttcaatcagaaatgtcggtgttatttcttccttattttcaatgtgtataaccctatcaagcacccacaccaacatcgataataactt 10427198  T
Q  268 tagaaaatgatataattcaatgtaatttttatgttctatcagaaatttcgatgctactgagctcggcctctatt 341  Q
     | |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||    
T  10427197 gacaaaatgatataattcaatgtaattgttatgttcgatcagaaatgtcgatgctactgagctcgacctctatt 10427124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 374 - 525
Target Start/End: Complemental strand, 10427125 - 10426956
Alignment:
Q  374 ttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttca---------------agggaaatcatcttagaaagattgaagttgaa 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||    
T  10427125 ttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcagcaagtatgtgtgtaagggaaatcatcttagaaagattgaagttgaa 10427026  T
Q  459 caagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaaga---taaagtggagcatattc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  10427025 caagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaagagtgtaaagtggagcatattc 10426956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 10427389 - 10427297
Alignment:
Q  47 tcaggtagtgatttctctctgat-gtttttctttctatttttatccc-ttattcttcacttattacatttccgacccatttatcaaacactga 137  Q
    ||||||||||||||||||| | | ||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  10427389 tcaggtagtgatttctctccgttagtttttctttctattttttcccccttattcttcagttattacatttccgacccatttatcaaacactga 10427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 6299513 - 6299554
Alignment:
Q  252 acatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  6299513 acatggataataatttgagaaaatgatataattcaatgtaat 6299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 6306323 - 6306364
Alignment:
Q  252 acatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  6306323 acatggataataatttgagaaaatgatataattcaatgtaat 6306364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 19602246 - 19602198
Alignment:
Q  245 cacaccaacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||||||  ||||||||||| |||||||||||||||||| ||||||    
T  19602246 cacaccaacactgataataatttgagaaaatgatataattcagtgtaat 19602198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 30866209 - 30866160
Alignment:
Q  245 cacaccaacatcgataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||| || ||||||||| ||||||| | ||||||||||||||||    
T  30866209 cacaccaacaccgctaataatttgagaaaatcacataattcaatgtaatt 30866160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 2140539 - 2140499
Alignment:
Q  252 acatcgataataattttagaaaatgatataattcaatgtaa 292  Q
    |||| ||||||||||| ||||||||| ||||||||||||||    
T  2140539 acattgataataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 7891331 - 7891363
Alignment:
Q  426 aagggaaatcatcttagaaagattgaagttgaa 458  Q
    |||||||||||||||||||||| ||||||||||    
T  7891331 aagggaaatcatcttagaaagagtgaagttgaa 7891363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 8954836 - 8954876
Alignment:
Q  203 atttcttccttattttcaatgtgtataaccctatcaagcac 243  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  8954836 atttcatccttatttacaaggtgtataaccctatcaagcac 8954876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 8965877 - 8965837
Alignment:
Q  203 atttcttccttattttcaatgtgtataaccctatcaagcac 243  Q
    ||||| ||||||||| ||| |||||||||||||||||||||    
T  8965877 atttcatccttatttacaaggtgtataaccctatcaagcac 8965837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 29711261 - 29711297
Alignment:
Q  250 caacatcgataataattttagaaaatgatataattca 286  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  29711261 caacatcgataataatttgagaaaatgacataattca 29711297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 9936815 - 9936856
Alignment:
Q  252 acatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  9936815 acatcgataataatttaagaaaatgatataattcaatataat 9936856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 29519194 - 29519237
Alignment:
Q  250 caacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||    
T  29519194 caacaccgataataattttaaaaaatcatataattcaatgtaat 29519237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 43551925 - 43551875
Alignment:
Q  246 acaccaacatcgataataattttagaaaatgatataattcaatgtaatttt 296  Q
    |||||||||| |||||||||||  |||||||| |||||||| |||||||||    
T  43551925 acaccaacattgataataatttacgaaaatgacataattcattgtaatttt 43551875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 27733845 - 27733889
Alignment:
Q  249 ccaacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||| |||||| | ||| |||||||||||||||||||||||||    
T  27733845 ccaacaccgataaaattttgagaaaatgatataattcaatgtaat 27733889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 34201098 - 34201062
Alignment:
Q  258 ataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaatt 34201062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 40150625 - 40150588
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||| |||||||||||||||||||||||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaat 40150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 18570971 - 18571014
Alignment:
Q  250 caacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||| |||||||||||| ||||||||| |||||||||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 40681987 - 40682025
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  40681987 cgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 31026700 - 31026737
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  31026700 cgataataatttaagaaaatgacataattcaatgtaat 31026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 12933788 - 12933752
Alignment:
Q  258 ataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  12933788 ataataatttaagaaaatgacataattcaatgtaatt 12933752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 16630793 - 16630837
Alignment:
Q  249 ccaacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||| |||||||||||| ||||||||| |||||||||| ||||    
T  16630793 ccaacaccgataataatttaagaaaatgacataattcaatttaat 16630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 3921666 - 3921709
Alignment:
Q  250 caacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||    
T  3921666 caacatcaataataatttgagaaaatgacataattcaatgtaat 3921709  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 42325554 - 42325601
Alignment:
Q  245 cacaccaacatcgataataattttagaaaatgatataattcaatgtaa 292  Q
    |||||||||| |||||||||||| ||||||||| |||||||| |||||    
T  42325554 cacaccaacaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 40747826 - 40747789
Alignment:
Q  257 gataataattttagaaaatgatataattcaatgtaatt 294  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaatt 40747789  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  257 gataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 99898 - 99936
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  99898 cgataataattttagaaaataacataattcaatgtaatt 99936  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 32630789 - 32630751
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  32630789 cgataataatttgagaaaattatataattcaatgtaatt 32630751  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 11596509 - 11596472
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  11596509 cgataataatttgagaaaatgacataattcaatgtaat 11596472  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 2335612 - 2335660
Alignment:
Q  245 cacaccaacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||| |||| ||||||||||| |||||||||| ||| ||||||||||    
T  2335612 cacaccgacatagataataatttgagaaaatgatgtaagtcaatgtaat 2335660  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 25863211 - 25863247
Alignment:
Q  258 ataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||| |||||||||||||||||| |||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaatt 25863247  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 43208339 - 43208291
Alignment:
Q  245 cacaccaacatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||| ||||| ||||| |||||| ||||||||| |||||||||||||||    
T  43208339 cacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaat 43208291  T

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Target: scaffold0316 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 16137 - 16178
Alignment:
Q  252 acatcgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||||||| ||||||||| ||||||||| |||||    
T  16137 acatcgataataatttaagaaaatgaaataattcaacgtaat 16178  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 30516407 - 30516374
Alignment:
Q  260 aataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||| |||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaat 30516374  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 38134460 - 38134423
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  38134460 cgataataatttgagaaaatgacataattcaatgtaat 38134423  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 12278830 - 12278878
Alignment:
Q  246 acaccaacatcgataataattttagaaaatgatataattcaatgtaatt 294  Q
    |||||||||  ||||||||||| ||||||||| |||||||| |||||||    
T  12278830 acaccaacactgataataatttaagaaaatgacataattcagtgtaatt 12278878  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 44172943 - 44172907
Alignment:
Q  257 gataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaat 44172907  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 18513295 - 18513258
Alignment:
Q  256 cgataataattttagaaaatgatataattcaatgtaat 293  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  18513295 cgataataatttgagaaaatgacataattcaatgtaat 18513258  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 5654644 - 5654608
Alignment:
Q  257 gataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaat 5654608  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 10546154 - 10546190
Alignment:
Q  257 gataataattttagaaaatgatataattcaatgtaat 293  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaat 10546190  T

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