View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_6 (Length: 528)
Name: NF5256_low_6
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 521400 - 521783
Alignment:
| Q |
18 |
acaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaactactattcctaaggggctatatagtggtgcactccat |
117 |
Q |
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| T |
521400 |
acaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaactactattcctaaggggctatatagtggtgcactccat |
521499 |
T |
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| Q |
118 |
caatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttat--cttgtgttgaaaaaactgagattaaatgctgtttctttgcaacact |
215 |
Q |
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| T |
521500 |
caatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttatatcttgtgttgaaaaaactgagattaaatgctgtttctttgcaacact |
521599 |
T |
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| Q |
216 |
acaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatttgttct |
315 |
Q |
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| T |
521600 |
acaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatttgttct |
521699 |
T |
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| Q |
316 |
cgggatcactcatgttctgtatagttgtctcgctgttggtttagcaatgagcaaggtcagtcattaaaatgtccagtttattat |
399 |
Q |
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| T |
521700 |
cgggatcactcatgttctgtatagttgtctcgctgttggtttagcgatgagcaaggtcagtcattaaaatttccagtttattat |
521783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 521813 - 521891
Alignment:
| Q |
436 |
attcaataagggtatctactagagttctatagaagaatgaacatgtttcgtatattttctacccattggaggaacttga |
514 |
Q |
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| T |
521813 |
attcaatatgggtatctactagagttcaatagaagaatgaacatgtttcttatattttctacccattggtggaacttga |
521891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 8826866 - 8826946
Alignment:
| Q |
251 |
cagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatttgttctcgggatcactcatgtt |
331 |
Q |
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| T |
8826866 |
cagggtcatgaatcatttgcttcttatgaaagtcttgagcagcttcatcgctttgtgtttgttcttgggatcactcatgtt |
8826946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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