View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5256_low_7 (Length: 523)
Name: NF5256_low_7
Description: NF5256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5256_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 17599150 - 17599644
Alignment:
| Q |
14 |
gatgatcattatcaagaacagcaagagattttatttgacatagcgtagttcgaatcaacttagatcccatagaaagattgcatatctgaagattttcttc |
113 |
Q |
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| T |
17599150 |
gatgaacattatcaagaacagtaagagattttatttgacatagcgtagttcgaatcaaattagatcccatagaaagattgcatatctgaagattttcttc |
17599249 |
T |
|
| Q |
114 |
atttagagtttgacaaagaagtttcttttgcacttcggttgggccatagtctccataaattatacttacatcgtcgataaagcacaagcaacaaattgat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17599250 |
atttagagtttgacaaagaagtttcttttgcacttcggttgggccatagtctccataaattttacttacatcgtcgataaagcacaagcaacaaattgat |
17599349 |
T |
|
| Q |
214 |
tacagattctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtccaaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17599350 |
tacagattctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtccaaaat |
17599449 |
T |
|
| Q |
314 |
agcttttctaactctaatgatttctccaatctgcatattgtagcctaaagatgacaggagagaaatagtaccaaatcatgacatgacaaccccaaacaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17599450 |
agcttttctaactctaatgatttctccaatctgcatattgtagcctaaagacaacaggagagaaatagtaccaaatcatgacatgacaaccccaaacaaa |
17599549 |
T |
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| Q |
414 |
aactacaaaatgataaagcagttcaacaaaacagggtaaggttttagtaataaacttaaaagtgttgattatcttgttgctaacatagaaaatac |
508 |
Q |
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| T |
17599550 |
aactacaaaatgataaagcagttcaacaaaacagtgtaaggttttagtaataaacttaaaagtgttgattatcttgttgctaacatagaaaatac |
17599644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 14724613 - 14724291
Alignment:
| Q |
20 |
cattatcaagaacagcaagagattttatttgacatagcgtagttcgaatcaacttagatcccatagaaagattgcatatctgaagattttcttcatttag |
119 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14724613 |
cattatcaagaacttcaagagattttatttgacatagcgtagttcgaatcaaattagatcccatagaaagattgcatatctgaagattttcttcgtttag |
14724514 |
T |
|
| Q |
120 |
agtttgacaaagaagtttcttttgcacttcggttgggccatagtctccataaattatacttacatcgtcgataaagcacaagcaacaaattgattacaga |
219 |
Q |
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| T |
14724513 |
agtttgacaaagaagttgcttttgcacttcggttgggccatagtctccataaattttactcacatcgtcgataaagcacaagcatcaaattgattagaga |
14724414 |
T |
|
| Q |
220 |
ttctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtccaaaatagcttt |
319 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14724413 |
ttctagcatacaaagcattaacaagag----------------------tccacaaatccctacagctcgaacatcattgtctgagtccaaaatagcttt |
14724336 |
T |
|
| Q |
320 |
tctaactct--aatgatttctccaatctgcatattgtagcctaaa |
362 |
Q |
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| T |
14724335 |
tctaactcttcaatgatttctccaatctggatattgtggcctaaa |
14724291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 420 - 508
Target Start/End: Complemental strand, 14724293 - 14724206
Alignment:
| Q |
420 |
aaaatgataaagcagttcaacaaaacagggtaaggttttagtaataaacttaaaagtgttgattatcttgttgctaacatagaaaatac |
508 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14724293 |
aaaatgataaagcagttcaacaaaacagtataag-ttttagtaataaacttaaaagcgttgattatcttgttgctaacatagaaaatac |
14724206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 31245334 - 31245044
Alignment:
| Q |
20 |
cattatcaagaacagcaagagattttatttgacatagcgtagttcgaatcaacttagatcccatagaaagattgcatatctgaagattttcttcatttag |
119 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| |||| || |||| |||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
31245334 |
cattatcaagaactataagggattttatttgacatagcctagtgcgtatcagattagatgccatgaaaagattgcatatctgaagattttcttcatttag |
31245235 |
T |
|
| Q |
120 |
agtttgacaaagaagtttcttttgcacttcggttgggccatagtctccataaattatacttacatcgtcgataaagca-caagcaacaaattgattacag |
218 |
Q |
| |
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||||||||||||||||| |||||||||| | | ||||||| |||||| |||||| |||||||||| || |||||||| |||||| ||||||||||| || |
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| T |
31245234 |
agtttgacaaagaagttgcttttgcactccaatcgggccatggtctccgtaaattttacttacatcctcaataaagcagcaagcatcaaattgattagag |
31245135 |
T |
|
| Q |
219 |
attctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtcca |
309 |
Q |
| |
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|||||| ||||||||||| || ||||||||| ||||||||||| || |||||||||||||||||| |||||||||||| |||||||||| |
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| T |
31245134 |
attctatcatacaaagcagtagcaagagtagtcttccctattccacccattccacaaatccctaccactcgaacatcatcatctgagtcca |
31245044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 31496990 - 31496913
Alignment:
| Q |
205 |
caaattgattacagattctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatcccta |
282 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || |||| |||| ||||||||||| | ||| |||||||| |||| |
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| T |
31496990 |
caaattgattagagattttagcatacaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattccta |
31496913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 13609385 - 13609093
Alignment:
| Q |
20 |
cattatcaagaacagcaagagattttatttgacatagcgtagttcgaatcaacttagatcccatagaaagattgcatatctgaagattttcttcatttag |
119 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||||| |
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| T |
13609385 |
cattatcaagaactacaagggattttatttgacatagcctagtttgaatcaaattagatcccatagaatgattccatatctggagattatcttcatttag |
13609286 |
T |
|
| Q |
120 |
agtttgacaaagaagtttcttttgcacttcggttgggccatagtctccataaattatacttacatcgtcgataaagcacaagcaa-caaattgattacag |
218 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||| ||| ||||||| |||| ||||| || |||||||| | | | |||||||||| || |
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|
| T |
13609285 |
agtttgacaaagaagttgcttctgcacttcaattgggccataacctctataaattttactcacatcatcaataaagcaacatctagcaaattgattggag |
13609186 |
T |
|
| Q |
219 |
attctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctgagtccaaa |
311 |
Q |
| |
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||||||| ||||||| ||| ||||||| | ||| ||||||| | ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
13609185 |
attctagggcacaaagctttagcaagagttgtctttcctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa |
13609093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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