View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257-Insertion-1 (Length: 710)
Name: NF5257-Insertion-1
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 55572296 - 55572749
Alignment:
| Q |
8 |
aggacctcatagatttatgactatttacacttatcttttaattgcgttacataccacatgaattctaggacatttttggtcccaacgatgtggtgtttgc |
107 |
Q |
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| T |
55572296 |
aggacctcatagatttatgactatttacacttatcttttaattgcgttacataccacatgaattataggacttttttggtcccaacgatgtggtgtttgc |
55572395 |
T |
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| Q |
108 |
tacagtaaatagatgggatatggtacatatcccaaatttgtagaaaagtgcaaattgttggaggagctgaatgtaaagctcaaatctacaaagctttgca |
207 |
Q |
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| T |
55572396 |
tacagtaaatagatgggatatggtacatatcccaaatttgtagaaaagtgcaaattgttggaggagctgaatgcaaagctcaaatctacaaagctttgca |
55572495 |
T |
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| Q |
208 |
ctgtggccactacttaacattgattgattatgatgcatgcaagaaaagaaacctaaacagaacagaacagaagcaaggaaggtagctcaattaaatacac |
307 |
Q |
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| T |
55572496 |
ctgtggccactacttaacattgattgattatgatgcatgcaagaaaagaaaccta-----aacagaacagaagcaaggaaggtagctcaattaaatacac |
55572590 |
T |
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| Q |
308 |
caaaaacaccnnnnnnnctctctatggctaatatgataagtttacttttgaaccaagcactcacgagtcacccctgaaactttttcctttcaattcatct |
407 |
Q |
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| T |
55572591 |
caaaaacacctttttttctctctatggctaatatgataagtttacttttgaaccaagcactcacgagtcacccctgaaactttttcctttcaattcatct |
55572690 |
T |
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| Q |
408 |
ttatgctgctaaacaacctaatccttctcatccatcttattacaaaaaaccgtgaaaac |
466 |
Q |
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| T |
55572691 |
ttatgctgctaaacaacctaatccttctcatccatcttattacaaaaaaccgtgaaaac |
55572749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 512 - 683
Target Start/End: Original strand, 55572789 - 55572958
Alignment:
| Q |
512 |
cacatattttcatgaaactccccttcattttgtttctattttctttatacaatgaaaatttcatcatccttttacgttcctttctgtctctctagttgtt |
611 |
Q |
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| T |
55572789 |
cacatattttcatgaaactccccttcattttgtttctattttctttatacaatgaaa-tttcatcatccttttacgttcctttctgtctctctagttgtt |
55572887 |
T |
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| Q |
612 |
atgtgctgtaaatggtttttatctttcacaactttgatgacccaagtgtcataaattgcatgacatggttcc |
683 |
Q |
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| T |
55572888 |
atgtgctgtaa-tggtttttatctttcacaactttgatgaaccaagtgtcataaattgcatgacatggttcc |
55572958 |
T |
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