View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5257-Insertion-2 (Length: 490)

Name: NF5257-Insertion-2
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5257-Insertion-2
NF5257-Insertion-2
[»] chr4 (2 HSPs)
chr4 (6-490)||(9277945-9278429)
chr4 (8-288)||(1643858-1644140)
[»] chr6 (5 HSPs)
chr6 (59-436)||(26621211-26621588)
chr6 (59-436)||(26727190-26727567)
chr6 (177-254)||(8095385-8095462)
chr6 (215-257)||(14325743-14325785)
chr6 (215-257)||(14418753-14418795)
[»] chr7 (1 HSPs)
chr7 (263-486)||(22268460-22268681)
[»] chr2 (2 HSPs)
chr2 (17-248)||(37178571-37178802)
chr2 (194-252)||(20523193-20523251)
[»] chr3 (3 HSPs)
chr3 (259-398)||(15832308-15832451)
chr3 (11-89)||(20605619-20605697)
chr3 (176-256)||(4674659-4674739)
[»] scaffold0102 (2 HSPs)
scaffold0102 (176-257)||(2265-2346)
scaffold0102 (214-257)||(6656-6699)
[»] chr1 (3 HSPs)
chr1 (214-257)||(23415327-23415370)
chr1 (197-249)||(15730794-15730846)
chr1 (164-248)||(23700684-23700768)
[»] chr5 (1 HSPs)
chr5 (8-64)||(9281502-9281558)


Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 6 - 490
Target Start/End: Complemental strand, 9278429 - 9277945
Alignment:
Q  6 cactctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgattaccacttggtgcgtga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278429 cactctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgattaccacttggtgcgtga 9278330  T
Q  106 gaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcagacaactgatgtctttaccaaagcagcaggacctaggcaatttcatgat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9278329 gaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcagacagctgatgtctttaccaaagcagcaggacctaggcaatttcatgat 9278230  T
Q  206 tgaattgtcaagcttgggatggtaggtatctaccaacctccagcttgtggggttatcagcatatgaagaaaaagaggatgaaataacaagaaaaacctag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9278229 tgaattgtcaagcttgggatggtaggtatctaccaacctccagcttgtggggttattagcatatgaagaaaaagaggatgaaataacaagaaaaacctag 9278130  T
Q  306 cttggcgcgcaagttactttctaactaaatttgagtttacttgtaatttcatttgcatttcactttcatttagttagttgaggtagttactatatgagct 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278129 cttggcgcgcaagttactttctaactaaatttgagtttacttgtaatttcatttgcatttcactttcatttagttagttgaggtagttactatatgagct 9278030  T
Q  406 gacatttccagattgtatataagcacttatcctgtacaattgtgaacacaatgcatcataattgattttctccatgttggatctt 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9278029 gacatttccagattgtatataagcacttatcctgtacaattgtgaactcaatgcatcataattgattttctccatgttggatctt 9277945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 1643858 - 1644140
Alignment:
Q  8 ctctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgattaccacttggtgcgtgaga 107  Q
    |||||||| || ||||| |||||| | ||||||||| | ||||| || |||||||| || ||||||||| |  ||||||| |  || ||||| |||||||    
T  1643858 ctctattgcgataaccagagtgctctacatatttctgcgaatcctgtcttccatgaacgcaccaaacacttggacattgactgtcatttggtacgtgaga 1643957  T
Q  108 aaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcagacaactgatgtctttaccaaagcagcaggacctaggcaatttcatgattg 207  Q
    | ||||||||| | || |||| |||||| ||  |||||||  |  |||| ||| | ||| |||| ||||| |||||||||||||| |||||||||| |||    
T  1643958 agattcaggctggtgtgatgcgtttgcttcccgtcacctctcacaatcaaacagcagatatcttcaccaaggcagcaggacctagacaatttcatgcttg 1644057  T
Q  208 aattgtcaagcttgggatggtaggtatctaccaacctccagctt--gtggggttatcagcatatgaagaaaaagaggatgaaa 288  Q
     ||  |||||||||||||||||| ||||||||||||||||||||  | |||| |||||||| |||||| ||||| ||||||||    
T  1644058 tatgctcaagcttgggatggtagatatctaccaacctccagcttgcgagggggtatcagcacatgaaggaaaagtggatgaaa 1644140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 59 - 436
Target Start/End: Original strand, 26621211 - 26621588
Alignment:
Q  59 catgagcgtaccaaacacctatacattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcaga 158  Q
    ||||||| ||||||||||||| ||||||| | | |||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||  |||| ||||    
T  26621211 catgagcataccaaacacctagacattgactccaacttagtgcgtgagaagattcaggctggagtcatgcgtttgctccccatcacctctcaacaccaga 26621310  T
Q  159 caactgatgtctttaccaaagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagctt--gtggg 256  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||  | |||    
T  26621311 caactgatgtttttaccaaagcagaaggacctaggcaatttcatgattgcattgtcaagcttgggatggtagataactaccaacctccagcttgcgaggg 26621410  T
Q  257 gttatcagcatatgaagaaaaagaggatgaaataacaagaaaaacctagcttggcgcgcaagttactttctaactaaatttgagtttacttgtaatttca 356  Q
    ||||| ||||||  ||||||||||| | |||||||||| | || |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  26621411 gttattagcataccaagaaaaagagaaagaaataacaaaagaatcctagcttggcgcgcaagttacctactaactaaatttgaatttacttgtaatttca 26621510  T
Q  357 tttgcatttcactttcatttagttagttgaggtagttactatatgagctgacatttccagattgtatataagcacttatc 436  Q
    |||||||||||||||||||||||||||| |||||||||   | ||| |||||||| ||||| ||||||||||||||||||    
T  26621511 tttgcatttcactttcatttagttagttaaggtagtta--ttgtgaactgacattaccagactgtatataagcacttatc 26621588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 59 - 436
Target Start/End: Original strand, 26727190 - 26727567
Alignment:
Q  59 catgagcgtaccaaacacctatacattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcaga 158  Q
    ||||||| ||||||||||||| ||||||| | | |||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||  |||| ||||    
T  26727190 catgagcataccaaacacctagacattgactccaacttagtgcgtgagaagattcaggctggagtcatgcgtttgctccccatcacctctcaacaccaga 26727289  T
Q  159 caactgatgtctttaccaaagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagctt--gtggg 256  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||  | |||    
T  26727290 caactgatgtttttaccaaagcagaaggacctaggcaatttcatgattgcattgtcaagcttgggatggtagataactaccaacctccagcttgcgaggg 26727389  T
Q  257 gttatcagcatatgaagaaaaagaggatgaaataacaagaaaaacctagcttggcgcgcaagttactttctaactaaatttgagtttacttgtaatttca 356  Q
    ||||| ||||||  ||||||||||| | |||||||||| | || |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  26727390 gttattagcataccaagaaaaagagaaagaaataacaaaagaatcctagcttggcgcgcaagttacctactaactaaatttgaatttacttgtaatttca 26727489  T
Q  357 tttgcatttcactttcatttagttagttgaggtagttactatatgagctgacatttccagattgtatataagcacttatc 436  Q
    |||||||||||||||||||||||||||| |||||||||   | ||| |||||||| ||||| ||||||||||||||||||    
T  26727490 tttgcatttcactttcatttagttagttaaggtagtta--ttgtgaactgacattaccagactgtatataagcacttatc 26727567  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 8095462 - 8095385
Alignment:
Q  177 aagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagcttgtg 254  Q
    ||||||||  ||| || |||||||| ||||| ||||||||||||||||||| ||  ||||||||||||||||||||||    
T  8095462 aagcagcaaaaccaagacaatttcacgattgcattgtcaagcttgggatggaagacatctaccaacctccagcttgtg 8095385  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 14325743 - 14325785
Alignment:
Q  215 aagcttgggatggtaggtatctaccaacctccagcttgtgggg 257  Q
    ||||| |||||||||| |||||||||||||| |||||||||||    
T  14325743 aagctagggatggtagatatctaccaacctctagcttgtgggg 14325785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 14418753 - 14418795
Alignment:
Q  215 aagcttgggatggtaggtatctaccaacctccagcttgtgggg 257  Q
    ||||| |||||||||| |||||||||||||| |||||||||||    
T  14418753 aagctagggatggtagatatctaccaacctctagcttgtgggg 14418795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 263 - 486
Target Start/End: Original strand, 22268460 - 22268681
Alignment:
Q  263 agcatatgaagaaaaagaggatgaaataacaagaaaaacctagcttggcgcgcaagttacttt-ctaactaaatttgagtttacttgtaatttcatttgc 361  Q
    |||||||||| |||| ||||| ||||||| ||| |||||||||||||||| |||||||||    ||||| | |||||| ||||| ||||||||||||| |    
T  22268460 agcatatgaataaaaggaggaagaaataataagcaaaacctagcttggcgtgcaagttacccaactaacaacatttgaatttacatgtaatttcatttac 22268559  T
Q  362 atttcactttcatttagttagttgaggtagttactatatgagctgacatttccagattgtatataagcacttatcctgtacaattgtgaacacaatgcat 461  Q
    ||||||||||||||||||||||| || |||||||  ||||||||| |||||| ||| |||||||||||||||||| ||||||||||  ||   |||| ||    
T  22268560 atttcactttcatttagttagttaagatagttac--tatgagctggcatttctagactgtatataagcacttatcatgtacaattg-aaagctaatgaat 22268656  T
Q  462 cataattgattttctccatgttgga 486  Q
    |||||||| |||||||||| |||||    
T  22268657 cataattggttttctccattttgga 22268681  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 37178571 - 37178802
Alignment:
Q  17 gacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgattaccacttggtgcgtgagaaaattcagg 116  Q
    ||||| ||||||||||| || || ||| | ||||| || || ||||| ||||||||||| ||  | ||||| | ||| || || |||||||| ||||| |    
T  37178571 gacaatcaaagtgctttacacatatctgccaatccggtctttcatgaacgtaccaaacatctggatattgactgccatttagttcgtgagaagattcaag 37178670  T
Q  117 ctcgagtcatgcatttgctccctatcacctcgtaacatcagacaactgatgtctttaccaaagcagcaggacctaggcaatttcatgattgaattgtcaa 216  Q
    |  ||||||||| ||| || || ||||| ||  ||||||||||| | ||||| || ||||| ||  | || |||||||||||||||||||| ||||||||    
T  37178671 caggagtcatgcgtttactacccatcacttctcaacatcagacagcagatgttttcaccaaggcttctggtcctaggcaatttcatgattgtattgtcaa 37178770  T
Q  217 gcttgggatggtaggtatctaccaacctccag 248  Q
     ||||||||||||| |||||||||||| ||||    
T  37178771 acttgggatggtagatatctaccaaccaccag 37178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 20523193 - 20523251
Alignment:
Q  194 caatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagcttg 252  Q
    ||||||||||| || ||   ||||||||||||||||| |||||||||||||||||||||    
T  20523193 caatttcatgaatgtatctccaagcttgggatggtagatatctaccaacctccagcttg 20523251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 259 - 398
Target Start/End: Original strand, 15832308 - 15832451
Alignment:
Q  259 tatcagcatatgaagaaaaagaggatgaaataacaag---aaaaacctagcttggcgcgcaagttactt-tctaactaaatttgagtttacttgtaatt- 353  Q
    ||||||||||||||||||||||||| |||| || |||   |||| ||||||||||||||||||||||||  ||| ||  |||||| |||||||||||||     
T  15832308 tatcagcatatgaagaaaaagaggaagaaacaataagagaaaaaccctagcttggcgcgcaagttacttaactagct-catttgaatttacttgtaatta 15832406  T
Q  354 tcatttgcatttcactttcatttagttagttgaggtagttactat 398  Q
    | |||| ||||||||||||||||||||||||  ||||||||||||    
T  15832407 taatttacatttcactttcatttagttagttagggtagttactat 15832451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 20605619 - 20605697
Alignment:
Q  11 tattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgatt 89  Q
    |||||||||||  |||||||||||||||||||  ||||||| || || ||||||||||||||||| ||| | |||||||    
T  20605619 tattgtgacaattaaagtgctttgcatatttcagctaatcctgtgtttcatgagcgtaccaaacatctagatattgatt 20605697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 4674739 - 4674659
Alignment:
Q  176 aaagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagcttgtggg 256  Q
    ||||||||||| || ||||||||  |||| || ||   ||||||||||||||| | |||||||||||||||||||||||||    
T  4674739 aaagcagcagggccaaggcaattctatgaatgcatcaccaagcttgggatggtggatatctaccaacctccagcttgtggg 4674659  T

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Target: scaffold0102 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 2265 - 2346
Alignment:
Q  176 aaagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagcttgtgggg 257  Q
    ||||||||||| || ||||||||  |||| || ||   ||||||||||||||||| ||||||||||||||||||||||||||    
T  2265 aaagcagcagggccaaggcaattctatgaatgcatcaccaagcttgggatggtagatatctaccaacctccagcttgtgggg 2346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 6656 - 6699
Alignment:
Q  214 caagcttgggatggtaggtatctaccaacctccagcttgtgggg 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  6656 caagcttgggatggtagatatctaccaacctccagcttgtgggg 6699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 23415370 - 23415327
Alignment:
Q  214 caagcttgggatggtaggtatctaccaacctccagcttgtgggg 257  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  23415370 caagcttgggatggtagatatctaccaacctccagcttgtgggg 23415327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 15730846 - 15730794
Alignment:
Q  197 tttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccagc 249  Q
    ||||||||| | |||||||||||||||||| |||  | |||||||||||||||    
T  15730846 tttcatgatcgcattgtcaagcttgggatgctagacagctaccaacctccagc 15730794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 23700768 - 23700684
Alignment:
Q  164 gatgtctttaccaaagcagcaggacctaggcaatttcatgattgaattgtcaagcttgggatggtaggtatctaccaacctccag 248  Q
    ||||| ||||| |||||||| |||||| | ||||||||||| || ||   |||||  ||||||| || |||||||||||||||||    
T  23700768 gatgtgtttacaaaagcagctggaccttgtcaatttcatgaatgcatcaccaagcaagggatggcagatatctaccaacctccag 23700684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 9281502 - 9281558
Alignment:
Q  8 ctctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgag 64  Q
    |||||||||||||| ||||||||| | |||||| |||||||||| ||||| ||||||    
T  9281502 ctctattgtgacaatcaaagtgctatacatattgcttctaatcctgtttttcatgag 9281558  T

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