View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5257-Insertion-4 (Length: 353)

Name: NF5257-Insertion-4
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5257-Insertion-4
NF5257-Insertion-4
[»] chr7 (1 HSPs)
chr7 (8-353)||(48365051-48365401)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 48365051 - 48365401
Alignment:
Q  8 agcataacacaactaattggtcactttcttcatcaacaaaattctctgccaccccaggtactataaacttcagctaaaattcttttgtcctttatcttct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48365051 agcataacacaactaattggtcactttcttcatcaacaaaattctctgccaccccaggtactataaacttcagctaaaattcttttgtcctttatcttct 48365150  T
Q  108 a---gtactagtannnnnnnn--accacacagttactattgctttgtattttaaatcttacggtatttgcataaattttaccaagtttttctagtaaaat 202  Q
    |   |||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48365151 actagtactagtattttttttttaccacacagttactattgctttgtattttaaatcttacggtatttgcataaattttaccaagtttttctagtaagat 48365250  T
Q  203 ttataagaggatgaattagtgtatgttttgattgactttgacaaaattacaataatccgtgattttgtaaaattcttaagtgtaaattttatgaaaattg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48365251 ttataagaggatgaattagtgtatgttttgattgactttgacaaaattacaataatccgtgattttgtaaaattctaaagtgtaaattttatgaaaattg 48365350  T
Q  303 accatgattttaccactcttattggtaatacatatatgcactaattagtag 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48365351 accatgattttaccactcttattggtaatacatatatgcactaattagtag 48365401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University