View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5257-Insertion-5 (Length: 333)

Name: NF5257-Insertion-5
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5257-Insertion-5
NF5257-Insertion-5
[»] chr4 (5 HSPs)
chr4 (8-333)||(22483299-22483624)
chr4 (114-248)||(35202339-35202473)
chr4 (90-178)||(7435193-7435281)
chr4 (93-144)||(35721705-35721756)
chr4 (108-236)||(23663576-23663704)
[»] chr2 (4 HSPs)
chr2 (93-269)||(39741044-39741220)
chr2 (93-229)||(3591840-3591976)
chr2 (82-229)||(3945868-3946015)
chr2 (120-236)||(41335318-41335434)
[»] chr3 (2 HSPs)
chr3 (87-249)||(34976122-34976284)
chr3 (114-269)||(41895808-41895963)
[»] chr8 (3 HSPs)
chr8 (108-247)||(9593538-9593677)
chr8 (88-202)||(28437305-28437419)
chr8 (90-158)||(5211252-5211320)
[»] chr7 (2 HSPs)
chr7 (90-247)||(8132015-8132172)
chr7 (89-203)||(21549584-21549698)
[»] chr5 (1 HSPs)
chr5 (93-202)||(13481016-13481125)
[»] chr1 (1 HSPs)
chr1 (93-202)||(34645977-34646086)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 22483624 - 22483299
Alignment:
Q  8 taaccagtcattggagagcatgttaacatgttcaaaaggagaacaagacaaaaagccaaaacctcctcaaccagaagctctaaaatgtccaagatgtgac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22483624 taaccagtcattggagagcatgttaacatgttcaaaaggagaacaagacaaaaagccaaaacctcctcaaccagaagctctaaaatgtccaagatgtgac 22483525  T
Q  108 tcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22483524 tcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacac 22483425  T
Q  208 taaggaatgttcctgttggtggggggtgtagaaagaacaaaagatcatcatcagcatcatcaaagagatctcaagatcaaccatttcaaaccaacccaaa 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22483424 taaggaatgttcctgttggtggggggtgtcgaaagaacaaaagatcatcatcagcatcatcaaagagatctcaagatcaaccatttcaaaccaacccaaa 22483325  T
Q  308 tccactcacttgtttcccttcattgt 333  Q
    ||||||||||||||||||||||||||    
T  22483324 tccactcacttgtttcccttcattgt 22483299  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 35202339 - 35202473
Alignment:
Q  114 aacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga 213  Q
    ||||| ||||| |||||||| || || || ||| | |||||||||||| ||||||||||  | ||||  ||||||||||| | |||||| ||||| || |    
T  35202339 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 35202438  T
Q  214 atgttcctgttggtggggggtgtagaaagaacaaa 248  Q
    | |||||||||||||| || || ||||| ||||||    
T  35202439 acgttcctgttggtggtggttgcagaaaaaacaaa 35202473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 7435193 - 7435281
Alignment:
Q  90 aaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttg 178  Q
    ||||||||| | ||||| |||| |||||| |||||||| |||| |||||| |||||||| || || || ||| ||||||||||| ||||    
T  7435193 aaatgtccacgttgtgaatcaaccaacacaaaattttgctacttcaacaactacagtctctctcagcccagacacttctgcaagacttg 7435281  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 35721705 - 35721756
Alignment:
Q  93 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattaca 144  Q
    |||||||||||||| ||||  ||||| || ||||||||||||||||||||||    
T  35721705 tgtccaagatgtgattcaacaaacacaaagttttgttactacaacaattaca 35721756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 23663576 - 23663704
Alignment:
Q  108 tcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacac 207  Q
    |||| |||||| |||||||| |||| |||||| ||||| ||  | |||||  |  ||||||||||| | |||||| | |||||||| | ||| ||| |||    
T  23663576 tcaaccaacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctgcaagacatgtaggcgttattggacaagagggggtgcac 23663675  T
Q  208 taaggaatgttcctgttggtggggggtgt 236  Q
    | || |||||||| |||||||| ||||||    
T  23663676 ttagaaatgttccagttggtggagggtgt 23663704  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 39741044 - 39741220
Alignment:
Q  93 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattgga 192  Q
    |||||||||||  |||||| |||||||||||| ||||| |||||||| ||||||||| | || |||||||| |||||||| ||||| || || |||||||    
T  39741044 tgtccaagatgcaactcaaccaacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattgga 39741143  T
Q  193 ctaaaggtggtacactaaggaatgttcctgttggtggggggtgtagaaagaacaaaagatcatcatcagcatcatca 269  Q
    | |||||||| ||| ||||||||||||||||||| || || || ||||| ||||||||||||||| || ||||||||    
T  39741144 ccaaaggtggaacattaaggaatgttcctgttggaggtggatgcagaaaaaacaaaagatcatcaccatcatcatca 39741220  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 3591840 - 3591976
Alignment:
Q  93 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattgga 192  Q
    ||||||||||||||||| |  || ||||||||||||||||||||||| || |     || |||||  |  | ||||||| | |||||| |||| ||||||    
T  3591840 tgtccaagatgtgactctacaaataccaaattttgttactacaacaactataacaagtctcaacctcgccatttctgcagggcttgtaagagacattgga 3591939  T
Q  193 ctaaaggtggtacactaaggaatgttcctgttggtgg 229  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3591940 ctaaaggtggtactctaaggaatgttcctgttggtgg 3591976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 3946015 - 3945868
Alignment:
Q  82 aagctctaaaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtag 181  Q
    ||||||| || |||||| | |||||||||   ||||| || ||||||||||||||||| |||||| | |||||||||||| | ||||| ||  |||| |     
T  3946015 aagctctcaagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaa 3945916  T
Q  182 gagatattggactaaaggtggtacactaaggaatgttcctgttggtgg 229  Q
      | |||||||| | ||||||||| || || |||||||||||||||||    
T  3945915 acgttattggacaagaggtggtactcttagaaatgttcctgttggtgg 3945868  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 41335318 - 41335434
Alignment:
Q  120 aaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacactaaggaatgttc 219  Q
    |||||||||||||||||||| || |   | || ||||||||| |||| |||||| | |||||| | |||||||| | ||| ||| || |||| |||||||    
T  41335318 aaattttgttactacaacaactataacttgtctcaaccaagacacttttgcaagacatgtaggcgttattggacaagagggggtgcattaagaaatgttc 41335417  T
Q  220 ctgttggtggggggtgt 236  Q
    |||||||||| ||||||    
T  41335418 ctgttggtggagggtgt 41335434  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 34976284 - 34976122
Alignment:
Q  87 ctaaaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagat 186  Q
    |||||||||||||| ||||| ||||   |||||||||| || |||||||||||||||||||| || || ||||| |||||||||||| ||||||| || |    
T  34976284 ctaaaatgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggt 34976185  T
Q  187 attggactaaaggtggtacactaaggaatgttcctgttggtggggggtgtagaaagaacaaaa 249  Q
    ||||||| ||||| || ||||| |||||  | ||||||||||| || |||||||| |||||||    
T  34976184 attggaccaaaggaggaacacttaggaacatccctgttggtggaggctgtagaaaaaacaaaa 34976122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 41895808 - 41895963
Alignment:
Q  114 aacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga 213  Q
    ||||| ||||| ||||||||||| || || || || ||||||||||| ||||| |||||  | ||||| || ||||||||| |||||||| |  |||| |    
T  41895808 aacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgtagaaggtattggactgaaggtggttctttaagaa 41895907  T
Q  214 atgttcctgttggtggggggtgtagaaagaacaaaagatcatcatcagcatcatca 269  Q
    |||||||||| ||||| || |  ||||| |||||||||||| | ||| ||||||||    
T  41895908 atgttcctgtaggtggtggttcaagaaaaaacaaaagatcaacctcatcatcatca 41895963  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 9593677 - 9593538
Alignment:
Q  108 tcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattggactaaaggtggtacac 207  Q
    |||| |||||| ||||||||||| || ||||| ||||||||  |||||||||||||||| |||||| | ||||| || ||||||||| |||| ||  | |    
T  9593677 tcaaccaacacaaaattttgttattataacaactacagtctcacacaaccaagatacttttgcaagacatgtagaaggtattggactgaaggaggatctc 9593578  T
Q  208 taaggaatgttcctgttggtggggggtgtagaaagaacaa 247  Q
    |||| |||||||| ||||| || || |  |||||||||||    
T  9593577 taagaaatgttccagttggaggtggttcaagaaagaacaa 9593538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 28437305 - 28437419
Alignment:
Q  88 taaaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagata 187  Q
    ||||||||||||||||||| ||    ||||| ||||| |||||||||||||| ||||||||  | ||||||||| | ||||||||  | || || |||||    
T  28437305 taaaatgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagata 28437404  T
Q  188 ttggactaaaggtgg 202  Q
    |||||| || |||||    
T  28437405 ttggacaaatggtgg 28437419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 5211320 - 5211252
Alignment:
Q  90 aaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaacca 158  Q
    ||||||||| | ||||| ||||||||||| ||||| || ||||||||||| |||| ||| |||||||||    
T  5211320 aaatgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaacca 5211252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 8132172 - 8132015
Alignment:
Q  90 aaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatatt 189  Q
    ||||||||||||||||| ||||  ||||| || || || ||||||||||| |||| ||||||||||||| |  | || |||||  ||||| |  | ||||    
T  8132172 aaatgtccaagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttatt 8132073  T
Q  190 ggactaaaggtggtacactaaggaatgttcctgttggtggggggtgtagaaagaacaa 247  Q
    |||||||||||||| ||||  | || ||||||||||| || || ||||||| ||||||    
T  8132072 ggactaaaggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa 8132015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 21549584 - 21549698
Alignment:
Q  89 aaaatgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatat 188  Q
    |||||||||||| ||||| || | |||||| || ||||| |||| |||||| |||||||| || || ||  || ||||||||||| ||||| | || |||    
T  21549584 aaaatgtccaaggtgtgattccaccaacacaaagttttgctacttcaacaactacagtctctcgcagccgcgacacttctgcaaggcttgtcgaaggtat 21549683  T
Q  189 tggactaaaggtggt 203  Q
    ||||| || ||||||    
T  21549684 tggacaaagggtggt 21549698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 13481016 - 13481125
Alignment:
Q  93 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattgga 192  Q
    ||||||||||||||||||  |||||| ||||| || ||||||||||| || ||  |  ||||||||||| | ||||||||  | ||||| ||||||||||    
T  13481016 tgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgga 13481115  T
Q  193 ctaaaggtgg 202  Q
    | ||||||||    
T  13481116 caaaaggtgg 13481125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 34645977 - 34646086
Alignment:
Q  93 tgtccaagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatacttctgcaagtcttgtaggagatattgga 192  Q
    |||||||| ||| | ||||  ||||| |||||||||||||||||||| || ||| |  ||||||||||||| ||||||||  | ||||| || |||||||    
T  34645977 tgtccaaggtgtaattcaattaacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattgga 34646076  T
Q  193 ctaaaggtgg 202  Q
    || |||||||    
T  34646077 ctcaaggtgg 34646086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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