View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_high_10 (Length: 410)
Name: NF5257_high_10
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 25821231 - 25821605
Alignment:
| Q |
13 |
aatattaaacgcagttggtcgataaaattaacaaaatgtacaaagaatataagtacctgggtaagttatctgaaaacatataagaatcactttttgaaat |
112 |
Q |
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| T |
25821231 |
aatattaaacgccgttggtcgataaaattaaaaaaatgtacaaagaatataa---cctgggtaagttatctgaaaacatataagaatcactttt-gaaat |
25821326 |
T |
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| Q |
113 |
tgaacaaaagatatacttttacaaaattgagcaaagctgtttgtattttcctgctatttggatactaaggatgtgcaatagttattgttatgcatgaact |
212 |
Q |
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| T |
25821327 |
tgaacaaaagatatacttttacaaaattgagcaaagctgtttgtattttcttgctgtttggatgctaaggatgtgcaatagttattgttatgcatgaact |
25821426 |
T |
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| Q |
213 |
atgatattaaacatttaaaagttaaactaatacttgttgccaatttcctggtgattgatgattttgtaacaaatatagctgaaccaagattgccttaagg |
312 |
Q |
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| T |
25821427 |
atgatattaaacatttaaaagttaaactaatacttgttgccaatttcctggtgattgataattttgtaacaaatatagctgaaccaagattgccttaagg |
25821526 |
T |
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| Q |
313 |
gagcaggttttgaaatggtgaagcagaaacaacatgtaggtggacctcaaactatgaagaaagattatcggatcgatcg |
391 |
Q |
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| T |
25821527 |
gagcaggttttgaaatggtgaagcagaaacaacatgtaggtggacctcaaactatgaagaaagattatcggatcgatcg |
25821605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 203 - 344
Target Start/End: Original strand, 25815714 - 25815851
Alignment:
| Q |
203 |
tgcatgaactatgatattaaacatttaaaagttaaactaatacttgttgccaatttcctggtgattgatgattttgtaacaaatatagctgaaccaagat |
302 |
Q |
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| T |
25815714 |
tgcataaactatgatattaaacatttaaaa-ttacaccaatacatgtt---aatttcctagttattgatgattttgtagcaaatttagcaaaaacaagat |
25815809 |
T |
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| Q |
303 |
tgccttaagggagcaggttttgaaatggtgaagcagaaacaa |
344 |
Q |
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| T |
25815810 |
tgccttaagggagcaggttttgaaatggaggagcagcaacaa |
25815851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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