View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_high_19 (Length: 251)
Name: NF5257_high_19
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 35118 - 34909
Alignment:
| Q |
25 |
ttaatcattttcgttctcagaatgttatttttat--gtgttatttgggggaggtaaggtaaggtgaaattagggtttcgttgttgtatttggggaagnnn |
122 |
Q |
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| T |
35118 |
ttaatcattttcgttctcagaatgttatttttatttgtgttatttgggggaggtaaggtaaggtgaaattagggtttcgttgttgtatttggggaagaaa |
35019 |
T |
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| Q |
123 |
nnnnnnnctaaaccctaattttacaaatggtgtgtgcaggctgtgagatggatttgtgcgaatctcctccaaaggctaaggaaaaagattgtgttgttcc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35018 |
aaaaaaactaaaccctaattttacaaatggtgtgtgcaggctgtgagatggatttgtgcgaatctcctccgaaggctaaggaaaaagattgtgttgttcc |
34919 |
T |
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| Q |
223 |
tgtaactcct |
232 |
Q |
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|||||||||| |
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| T |
34918 |
tgtaactcct |
34909 |
T |
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