View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_high_24 (Length: 212)
Name: NF5257_high_24
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 49013445 - 49013628
Alignment:
| Q |
19 |
accatcacgaattccaatggcgcgttccctgattgcagcatttgcaaagctagcgaggttgtgtatccaacctcagaggcagagctcatatcaatagtca |
118 |
Q |
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| T |
49013445 |
accatcacgaattccaatggcgcgttccctgaccaaagcatttgcaaagctagcgaggttgtgtatccaacctcagaggtagagcttatatcaatagtcg |
49013544 |
T |
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| Q |
119 |
cattagcttcagaaaacaacagaaaaatgaaagttgcgacgcgcttctcccacagcattccaaagctaacttgtcctgatgatg |
202 |
Q |
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| T |
49013545 |
cgttagcttcagaaaacaacagaaaaatgaaagttgcgacgcgcttctcccacagcattccaaagctaacttgtcctgatgatg |
49013628 |
T |
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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 494111 - 493929
Alignment:
| Q |
19 |
accatcacgaattccaatggcgcgttccctgattgcagcatttgcaaagctagcgaggttgtgtatccaacctcagaggcagagctcatatcaatagtca |
118 |
Q |
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|||||||| ||||| ||||||| |||||| ||| | |||||||||| ||||||||||||| |||| |||||| | ||||| ||||| |||||||||||| |
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| T |
494111 |
accatcaccaattcaaatggcgtgttccccgatcgaagcatttgcagagctagcgaggttatgtacccaaccactgaggcggagcttatatcaatagtcg |
494012 |
T |
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| Q |
119 |
cattagcttcagaaaacaacagaaaaatgaaagttgcgacgcgcttctcccacagcattccaaagctaacttgtcctgatgat |
201 |
Q |
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| T |
494011 |
cgttagcttcaaaaaacaacagaaaagtgaaagttgcaacgcgcttctctcacagcataccaaaactagcttgtcccgatgat |
493929 |
T |
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