View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5257_high_5 (Length: 474)
Name: NF5257_high_5
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 3783571 - 3784004
Alignment:
| Q |
18 |
aataagggctgcacttgacaagttagactttgcttcatttattgttcatttatgagagagataaatacatataatagtttagtgaaatccattagtagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||| || ||| |
|
|
| T |
3783571 |
aataagggctgcacttgacaagttaaattttgcttcatttattgttcatttatgaaagagattgataaatattatagtttagtgaaatccatcggtggaa |
3783670 |
T |
|
| Q |
118 |
cccactaaatcactaatctatttcttatgacagcttaacgagattcattagtaagatccattaaatcattaatttatttcttgtgtatatctctctcgta |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3783671 |
tccactaaatcactaatct------tatgacagcttaacgagatccat-------at--attaaatcactaatttatttcttgtgtatatctctctcgta |
3783755 |
T |
|
| Q |
218 |
aataaacaaacatgccatggatcactttgaggtatgagtatcaagcgtgcttggtgcgtactggttactgcatggtgagctgtctgaccactatgttctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3783756 |
aataaacaaacatgccatggatcactttgaggtatgagtatcaagcgtgcttggtgcgtactggttactgcatggtgagctgtctgaccactatgttctt |
3783855 |
T |
|
| Q |
318 |
tacctgtctccacttccaatagtatcccctctccttattgtcttccttcttaaagaaaacaaaagacaaaccaaagacataaaatgcgcacaacatagac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3783856 |
tacctgtctccacttccaatagtatcccctctccttattgtcttccttcttaaagaaaacaaaagacaaaccaaagacataaaatgcgcacaacatagac |
3783955 |
T |
|
| Q |
418 |
atacatagcgacaaactcattcacaaaatcactttaattttcctatgct |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3783956 |
atacatagcgacaaactcattcacaaaatcactttaattttcctatgct |
3784004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 34453959 - 34454023
Alignment:
| Q |
44 |
actttgcttcatttattgttcatttatgagagagataaatacatataatagtttagtgaaatcca |
108 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| ||| |||||| |||||||| ||||| |
|
|
| T |
34453959 |
actttgctctatttattgtctatttataagagagataaacacaaataataatttagtgagatcca |
34454023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 32835131 - 32835170
Alignment:
| Q |
54 |
atttattgttcatttatgagagagataaatacatataata |
93 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32835131 |
atttattgttcatttatgagagagatagatacatgtaata |
32835170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 16875145 - 16875109
Alignment:
| Q |
44 |
actttgcttcatttattgttcatttatgagagagata |
80 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
16875145 |
actttgctccatttattgtccatttatgagagagata |
16875109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University