View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_high_6 (Length: 450)
Name: NF5257_high_6
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 43453398 - 43452969
Alignment:
| Q |
19 |
aacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattaca |
118 |
Q |
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| T |
43453398 |
aacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattaca |
43453299 |
T |
|
| Q |
119 |
atataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcct |
218 |
Q |
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| T |
43453298 |
atataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcct |
43453199 |
T |
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| Q |
219 |
ctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactt |
318 |
Q |
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| T |
43453198 |
ctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactt |
43453099 |
T |
|
| Q |
319 |
tcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgtt |
418 |
Q |
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| T |
43453098 |
tcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgtt |
43452999 |
T |
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| Q |
419 |
accctcctaatattaatattcttcgacatc |
448 |
Q |
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| T |
43452998 |
accctcctaatattaatattttttgacatc |
43452969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 68 - 423
Target Start/End: Complemental strand, 43462788 - 43462433
Alignment:
| Q |
68 |
ctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacat |
167 |
Q |
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|||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| | | |||||||||| |||||||||| ||||||||| |
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| T |
43462788 |
cttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacat |
43462689 |
T |
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| Q |
168 |
ttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgctttgcatgc |
267 |
Q |
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|| || ||||||| |||||||||||||| | ||| ||||||||||||||||||| ||||| ||| |||||||| |||||||| ||| | |||||||| |
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| T |
43462688 |
ttagactcccaaccaagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgc |
43462589 |
T |
|
| Q |
268 |
gtatgtcttcccggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcatctcctaacttataaaattccctaaaaggacca |
367 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| ||| ||||| |||||| |||| |
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| T |
43462588 |
atacgttttcccggttgatttctccaaacaaagtgaagtagttccaaattccccttctccaagttcatctcctaactcatagtattccttaaaagaacca |
43462489 |
T |
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| Q |
368 |
ttgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccct |
423 |
Q |
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||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
43462488 |
ttgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttaccct |
43462433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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