View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_1 (Length: 757)
Name: NF5257_low_1
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 384 - 740
Target Start/End: Complemental strand, 2013988 - 2013634
Alignment:
| Q |
384 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
483 |
Q |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
484 |
tctgatcatttatttttcttcaaattattatcagtgtataagtatcagtgtcgtgtcaggtgtctgtgtaggtttttcataggtgtatgtttggaggaat |
583 |
Q |
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| T |
2013888 |
tctgatcattttttttt--tcaaattattatctgtgtataagtatcagtgtcgtgtctcgtgtctgtgtaggtttttcataggtgtatgtttggaggaat |
2013791 |
T |
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| Q |
584 |
tagacatggaaatgaaaattagaagaacagagtaaaaaatgaatcatcagaaacaacaagaacaccaacttgcgttgcgttcaacagaaatgataatggg |
683 |
Q |
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| T |
2013790 |
tagacatggaaatgaaaattagaagaacaaagtaaaaaatgaatcatcagaaacaacaagaacaccaacctgcgttgcgttcaacagaaatgatagtggg |
2013691 |
T |
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| Q |
684 |
aagcgcgggaaggaaacgagatgcaaacaactctggatttcatctcacagccaaaac |
740 |
Q |
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| T |
2013690 |
aagcgcgggaaggaaacgagatgcaaacaactctggatttcatctcacagctaaaac |
2013634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 2014359 - 2014054
Alignment:
| Q |
8 |
gacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatgcatatccaccttgatga |
107 |
Q |
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| T |
2014359 |
gacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatccatatccaccttgatga |
2014260 |
T |
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| Q |
108 |
acaagaaatatagttaacatcaaggattattcataggcaaaaaacctttctgcaacaagaagtagcaaatctctatattatttgcctaataatttaaagc |
207 |
Q |
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| T |
2014259 |
acaagaaatatagttaacatcaaggattattcataggca-aaaacctttctgcaacaggaagtagaaaatctctatattatttgcctaataatttaaagc |
2014161 |
T |
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| Q |
208 |
gaaaaattggagaagggaaattattatgtaa-----taaagtgaaactaatgaccgtttacgattgtgttgaacttcatctgataattataaaaaagacg |
302 |
Q |
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| T |
2014160 |
gaaaaattggagaagggaaattattatgtaataaattaaagtgaaactaatgaccgtttacgactgtgttgaacttcatctgataattataaaaaagaca |
2014061 |
T |
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| Q |
303 |
ttgcaga |
309 |
Q |
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| T |
2014060 |
ttgcaga |
2014054 |
T |
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