View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_12 (Length: 409)
Name: NF5257_low_12
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 31114410 - 31114667
Alignment:
| Q |
19 |
cgttaaaaaattggcgacttgttttgcaagtaagagttatattatgagtacaaaaaagcatgcatcatcaacaacttcctagacgagatggttacccaca |
118 |
Q |
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| T |
31114410 |
cgttaaaaaattggtgacttgttttgcaagtaagagttatattatgagtacataaaagcatgcatcatcaacaacttcctagacgagatggttacccaca |
31114509 |
T |
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| Q |
119 |
ttctgtcttttctcccaatcaaataagc-tttagaaccaatgtccattcaaagaggtggatcccattatgccactcactctccattatctgcattgatga |
217 |
Q |
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| T |
31114510 |
ttctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcactctccattatctgcattgatga |
31114609 |
T |
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| Q |
218 |
tagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggac |
275 |
Q |
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| T |
31114610 |
tagaagcttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 31114681 - 31114739
Alignment:
| Q |
343 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggatgatgtccat |
401 |
Q |
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| T |
31114681 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccat |
31114739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 31088499 - 31088611
Alignment:
| Q |
190 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggacgcaattatgttcaa |
289 |
Q |
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| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
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| Q |
290 |
cccccactctcaa |
302 |
Q |
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| T |
31088599 |
cccacactctcaa |
31088611 |
T |
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