View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5257_low_14 (Length: 379)
Name: NF5257_low_14
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 16974353 - 16974002
Alignment:
| Q |
11 |
gaacctgtgttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaa |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16974353 |
gaaccagtgttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtacatgtgcacaaaggcgcaa |
16974254 |
T |
|
| Q |
111 |
tccttgaaagtaagcttcccgggttaagagactgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaa |
210 |
Q |
| |
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||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16974253 |
tccttgaaaataagcttccagggttaagggacagtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcaaaa |
16974154 |
T |
|
| Q |
211 |
cacaatatttaactttgaacgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcggaagaagaaaaatctgctctcgac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16974153 |
cacaatatttaactttgaacgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcagaagaagaaaaatctgctctcgac |
16974054 |
T |
|
| Q |
311 |
aaggatcatctggaaaagattagactgaacccacatgaaggtgtcaaaacaa |
362 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16974053 |
aaggatcaactggaaaagattagactgaacccacatgaaggtgtcaaaacaa |
16974002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 10604229 - 10604566
Alignment:
| Q |
25 |
caacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaaagtaag |
124 |
Q |
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||||| |||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||| ||||| |||||||| || |||||||||| |||| |
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|
| T |
10604229 |
caacacaacaagagacccttctgatgataagatcaagaagctgaaaatgctaatggatccctttgtacatgttcacaaaggggcgatccttgaaaataag |
10604328 |
T |
|
| Q |
125 |
cttcccgggttaagagactgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaacacaatatttaact |
224 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10604329 |
cttcccgggttaagggactgtttggtgactttgaaggcagatagtttgcagaacgaaattctgaagagcattaaacgttctcagaacaccatatttaact |
10604428 |
T |
|
| Q |
225 |
ttgaacgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcggaagaagaaaaatctgctctcgacaaggatcatctgga |
324 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
10604429 |
ttgaacgtaagatagcattgacatccgtccatccatcgcttttccttgaatgttctctttcggaagaagaagaatctgctcttgacaaggatcagctgga |
10604528 |
T |
|
| Q |
325 |
aaagattagactgaacccacatgaaggtgtcaaaacaa |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10604529 |
aaagcttagactgaacccacatgaaggtgtcaaaacaa |
10604566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 360
Target Start/End: Complemental strand, 16965388 - 16965073
Alignment:
| Q |
42 |
cttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaaagtaagcttcccgggttaagaga |
141 |
Q |
| |
|
|||||||| || |||||||| |||| || ||||| |||||||||||||| ||||| |||||||| || |||||| ||| |||||||||||||||||| | |
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| T |
16965388 |
cttctgataatgagatcaagcagttaaagttgcttatggatccctttgttcatgttcacaaaggtgcgatccttcaaaagaagcttcccgggttaagaaa |
16965289 |
T |
|
| Q |
142 |
ctgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaacacaatatttaactttgaacgtaaggtagca |
241 |
Q |
| |
|
||| | ||||||||||| | | ||||| ||||| ||| ||| ||||||||||| ||||||| ||| || |||| || ||| | |||||| || |
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| T |
16965288 |
ttgtattctgactttgaagccggacagttttcagaagcaaactcttgagagcattaaaagttctcacaac---atttttatctctgagcctaaggtgaca |
16965192 |
T |
|
| Q |
242 |
ttgacatccgtccatccatcgcttttccttgaatgtgctctttcggaagaagaaaaatctgctctcgacaaggatcatctggaaaagattagactgaacc |
341 |
Q |
| |
|
|| |||| ||||||||||| ||||| || ||||| |||| ||||||||| |||||| |||||||||||| | || |||||| || || |||| | |
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|
| T |
16965191 |
atggcatctgtccatccatctcttttgctcgaatgcaaacttttggaagaagaggaatctgttctcgacaaggaccggctagaaaagcttcgattgaatc |
16965092 |
T |
|
| Q |
342 |
cacatgaaggtgtcaaaac |
360 |
Q |
| |
|
|| ||| |||||| ||||| |
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| T |
16965091 |
caaatggaggtgtgaaaac |
16965073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 16989601 - 16989432
Alignment:
| Q |
42 |
cttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaaagtaagcttcccgggttaagaga |
141 |
Q |
| |
|
||||||| ||| |||||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||||| ||||||||||| |
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|
| T |
16989601 |
cttctgacgataagatcaagcagttgaaattgcttatggatccctttgttcatgttcacaaaggcgcgatcctacaaaagaagcttcctgggttaagaga |
16989502 |
T |
|
| Q |
142 |
ctgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaac |
211 |
Q |
| |
|
||| || || ||||||| | | |||||| || || ||||||| |||| ||||| ||||||||||| |
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|
| T |
16989501 |
ttgtgtgctgtgtttgaagccggatagttttcataagcaaattcttgagagttttaaaagttctcagaac |
16989432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 17005138 - 17005053
Alignment:
| Q |
54 |
agatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaaagtaagcttcccgggttaaga |
139 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| |||||| ||| | |||||||||||||||| |
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| T |
17005138 |
agatcaagcagttaaaattgcttatggatccctttgttcatgttcacaaaggcgcgatccttcaaaagatgcttcccgggttaaga |
17005053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 35265731 - 35266074
Alignment:
| Q |
19 |
gttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || |
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|
| T |
35265731 |
gttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgttcatgtgtacaaaggcgctttcctttaa |
35265830 |
T |
|
| Q |
119 |
agtaagcttcccgggttaagagactgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaacacaatat |
218 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35265831 |
aataagcttcctgggttaagggactgtttggtgactttgaaggctggtagtttgcataatgaaattctgaagagcattaaacgttctcagaacacaatat |
35265930 |
T |
|
| Q |
219 |
ttaactttgaacgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcggaagaagaaaaatctgctctcgacaaggatca |
318 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
35265931 |
ttaactttgaacgtaaggtagcgttgacatctgtccatccatcgcttttccttgaatgtgctctttcagaagaagaaaaatctgctctcgacaaggatca |
35266030 |
T |
|
| Q |
319 |
tctggaaaagattagactgaacccacatgaaggtgtcaaaacaa |
362 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35266031 |
tctggaaaagtttagactgaacccacatgaaggtgtcaaaacaa |
35266074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 35925167 - 35924824
Alignment:
| Q |
19 |
gttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgtgcatgtgcacaaaggcgcaatccttgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || |
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|
| T |
35925167 |
gttgctcaacaaaacaagagacccttctgatgatcagatcaagaagtttaaattgctaatggatccctttgttcatgtggacaaaggcgcggtccttaaa |
35925068 |
T |
|
| Q |
119 |
agtaagcttcccgggttaagagactgtttggtgactttgaaggctggtagtttgcagaatgaaattctgaagagcattaaacgttctcagaacacaatat |
218 |
Q |
| |
|
| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35925067 |
aataagcttcctgggttaagggactgtttggtgactttgaaggctggtagtttgcataatgaaattctgaagagcattaaacgttctcataacacaatat |
35924968 |
T |
|
| Q |
219 |
ttaactttgaacgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcggaagaagaaaaatctgctctcgacaaggatca |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35924967 |
ttaactttgaatgtaaggtagcattgacatccgtccatccatcgcttttccttgaatgtgctctttcagaagaagaaaaatctgctctcgacaaggatca |
35924868 |
T |
|
| Q |
319 |
tctggaaaagattagactgaacccacatgaaggtgtcaaaacaa |
362 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35924867 |
gctggaaaagcttagactgaacccacatgaaggtgtcaaaacaa |
35924824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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