View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_17 (Length: 346)
Name: NF5257_low_17
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 29068266 - 29068583
Alignment:
| Q |
19 |
actacatacgaaaatcaagatggagctatatatgaagcatcccatcaaacttgattagaaactccagcagcatgactgcatacataaaattttaatttaa |
118 |
Q |
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| T |
29068266 |
actacatacgaaaatcaagatggagctatatatgaagcatcccatcaaacttgattagaaactccagcagcatgactgcatacataaaattttaatttaa |
29068365 |
T |
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| Q |
119 |
acttcaaacaaattagtagttatagagggtggtaaatttatgaattttttgcttctttgtgcaacaagccacctagcatgtgttaaaaagaactaacaac |
218 |
Q |
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| T |
29068366 |
acttcaaacaaattagtagttatagagggtggtaaatttatgaattttttgcttctttgtgcaacaagccacctagcatgtgttaaaaagaactaacaac |
29068465 |
T |
|
| Q |
219 |
acctccacttacatttttgtttagcttctctttaaaacatcagtaatgcatnnnnnnnttatattttggtcattacaatgattcaaagacatttatctga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068466 |
acctccacttacatttttgtttagcttctctttaaaacatcagtaatgcataaaaaaattatattttggtcattacaatgattcaaagacatttatctga |
29068565 |
T |
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| Q |
319 |
cattctgacctacctatg |
336 |
Q |
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|||||||||||||||||| |
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| T |
29068566 |
cattctgacctacctatg |
29068583 |
T |
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