View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_20 (Length: 253)
Name: NF5257_low_20
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 27794337 - 27794585
Alignment:
| Q |
1 |
tataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccctaataaaatt |
100 |
Q |
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| T |
27794337 |
tataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccctaataaaatt |
27794436 |
T |
|
| Q |
101 |
catgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagataaccttataatgttggattaaataatg |
200 |
Q |
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| T |
27794437 |
catgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagataaccttataatgttggattaaataatg |
27794536 |
T |
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| Q |
201 |
tttctcaagaaaatatctttcactatgctggattctccctatgcttctc |
249 |
Q |
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| T |
27794537 |
tttctcaagaaaatatctttcactatgctggattctctctatgtttctc |
27794585 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 40752104 - 40752185
Alignment:
| Q |
10 |
ctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccct |
91 |
Q |
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||||||||| || || |||||||| ||||||| |||||||| || | ||||||||||||||||||||||||||||||||| |
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| T |
40752104 |
ctcttcttcctcttctgtgaaaggtcttctgttaattcttggatctagctgattgaaccatctcaacctacaacttttccct |
40752185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 18245444 - 18245492
Alignment:
| Q |
36 |
ttctgtttattcttgggtccaattgattgaaccatctcaacctacaact |
84 |
Q |
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||||||| |||||||| |||| ||| ||||||||||||| ||||||||| |
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| T |
18245444 |
ttctgttgattcttggatccagttggttgaaccatctcagcctacaact |
18245492 |
T |
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