View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_23 (Length: 237)
Name: NF5257_low_23
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 8439642 - 8439800
Alignment:
| Q |
1 |
atatataaaggtgggccatgacttttgttaaaacaacattgtgatttcttcctgacacatattttcactgtaactaacattagtgtttaccaaaacaaga |
100 |
Q |
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| T |
8439642 |
atatataaaggtgggccatgatttttgttaaaacaacatcgtgatttcttcgtgacacatattttcactgtaactaacattagtgtttaccaaaacaaga |
8439741 |
T |
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| Q |
101 |
gtaataactgttccgannnnnnnnagaagtttgtggttgttttagtaggagagtgtggc |
159 |
Q |
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| T |
8439742 |
gtaataactgttccaattttttttagaagtttgtggttgttttactaggagagtgtggc |
8439800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 47400933 - 47400997
Alignment:
| Q |
18 |
atgacttttgttaaaacaacattgtgatttcttcctgacacatattttcactgtaactaacatta |
82 |
Q |
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| T |
47400933 |
atgacttttattaaaacaacatcgtgatttgctcgggacacatattttcgctgtaactagcatta |
47400997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 8439819 - 8439853
Alignment:
| Q |
178 |
aaaagataagagagtggcttttgattcgtaaagat |
212 |
Q |
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| T |
8439819 |
aaaagataagagagtggcttttaattcgtaaagat |
8439853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 32816602 - 32816685
Alignment:
| Q |
1 |
atatataaaggtgggccatgacttttgttaaaacaacattgtgatttcttcc-tgacacatattttcactgtaactaacattag |
83 |
Q |
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| T |
32816602 |
atatataaaggtgggtcatggctgttgttaaaacaacattgtgatttcttccgtggcatatattttcgttgtaactagcattag |
32816685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 16358965 - 16359049
Alignment:
| Q |
1 |
atatataaaggtgggccatgacttttgttaaaacaacattgtgatttcttcctgacacatattttcactgtaactaacattagtg |
85 |
Q |
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| T |
16358965 |
atatataaaggtgggccgtggcttttgtcaaaacaacatcatgattttctcaggacacatattttctatgtaactagcattagtg |
16359049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30282169 - 30282235
Alignment:
| Q |
1 |
atatataaaggtgggccatgactttt-gttaaaacaacattgtgatttcttcctgacacatattttc |
66 |
Q |
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|||||||||||||| |||||| |||| ||||||| ||||| ||||||| ||| ||||||||||||| |
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| T |
30282169 |
atatataaaggtggcccatgattttttgttaaaataacatcgtgattttttcgggacacatattttc |
30282235 |
T |
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