View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5257_low_24 (Length: 234)

Name: NF5257_low_24
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5257_low_24
NF5257_low_24
[»] chr5 (10 HSPs)
chr5 (14-218)||(34639730-34639934)
chr5 (76-127)||(13838861-13838912)
chr5 (76-127)||(6462384-6462435)
chr5 (79-137)||(4283126-4283184)
chr5 (153-204)||(13263518-13263569)
chr5 (98-137)||(16869957-16869996)
chr5 (98-127)||(1621561-1621590)
chr5 (98-127)||(9004857-9004886)
chr5 (99-127)||(11863386-11863414)
chr5 (101-137)||(41892918-41892954)
[»] chr3 (5 HSPs)
chr3 (76-137)||(38684754-38684815)
chr3 (88-127)||(9198189-9198228)
chr3 (98-127)||(32109551-32109580)
chr3 (98-127)||(32326158-32326187)
chr3 (88-137)||(36879048-36879097)
[»] chr6 (2 HSPs)
chr6 (48-117)||(2255282-2255352)
chr6 (86-127)||(8014699-8014740)
[»] chr2 (5 HSPs)
chr2 (76-137)||(27679099-27679160)
chr2 (94-127)||(44984341-44984374)
chr2 (98-127)||(15804441-15804470)
chr2 (94-127)||(40909949-40909982)
chr2 (91-127)||(31062980-31063016)
[»] chr7 (2 HSPs)
chr7 (76-124)||(24432754-24432802)
chr7 (76-117)||(12473126-12473167)
[»] chr4 (5 HSPs)
chr4 (98-134)||(20988825-20988861)
chr4 (98-137)||(3535194-3535233)
chr4 (85-127)||(21501653-21501695)
chr4 (98-127)||(24418250-24418279)
chr4 (98-127)||(52831491-52831520)
[»] chr1 (7 HSPs)
chr1 (77-137)||(10518256-10518316)
chr1 (98-137)||(20004003-20004042)
chr1 (92-127)||(20791970-20792005)
chr1 (98-128)||(37131516-37131546)
chr1 (98-127)||(15942493-15942522)
chr1 (93-137)||(28736207-28736251)
chr1 (85-137)||(35272615-35272667)
[»] scaffold0004 (1 HSPs)
scaffold0004 (98-127)||(339039-339068)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 34639934 - 34639730
Alignment:
Q  14 cacagaccaaatttatgtcttaccaaccagagcctaagattacagggtaaaattgagagaccatgataagctaaaagttttaacctataagctacttgaa 113  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34639934 cacaaaccaaatttatgtcataccaaccagagcctaagattacagggtaaaattgagagaccatgataagctaaaagttttaagctataagctacttgaa 34639835  T
Q  114 ttagcttatcaaaagatgctataacatactnnnnnnnngttataagctggtgagaaaatgattgttacgaaacaggtcttttttaatcatatcataccag 213  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34639834 ttagcttatcaaaagatgctataacatactaaaaaaaagttataagctggtgagaaaatgattgttacgaaacaggtcttttttaatcatatcataccag 34639735  T
Q  214 cttat 218  Q
    |||||    
T  34639734 cttat 34639730  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 13838861 - 13838912
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  13838861 atgataagctataagttttaagctataagctacttgaattagctaatcaaaa 13838912  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 6462384 - 6462435
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||| ||| |||||  |||||||||||||||||||||||||||||    
T  6462384 atgataagctataagctttaagatataagctacttgaattagcttatcaaaa 6462435  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 4283184 - 4283126
Alignment:
Q  79 ataagctaaaagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||| ||| ||||| |||||||||| ||||||||||||||||||| ||| |||||    
T  4283184 ataagctataaggtttaagctataagctatttgaattagcttatcaaaaaatggtataa 4283126  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 13263518 - 13263569
Alignment:
Q  153 ttataagctggtgagaaaatgattgttacgaaacaggtcttttttaatcata 204  Q
    ||||||||| ||||||||||||||||||| ||||| |||| ||||| |||||    
T  13263518 ttataagcttgtgagaaaatgattgttaccaaacaagtctattttagtcata 13263569  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 16869957 - 16869996
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  16869957 ctataagctacttgaattagcttatcaaaaaacgctataa 16869996  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 1621561 - 1621590
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  1621561 ctataagctacttgaattagcttatcaaaa 1621590  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 9004886 - 9004857
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  9004886 ctataagctacttgaattagcttatcaaaa 9004857  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 11863386 - 11863414
Alignment:
Q  99 tataagctacttgaattagcttatcaaaa 127  Q
    |||||||||||||||||||||||||||||    
T  11863386 tataagctacttgaattagcttatcaaaa 11863414  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 41892918 - 41892954
Alignment:
Q  101 taagctacttgaattagcttatcaaaagatgctataa 137  Q
    ||||||||||||||||||||||||||| | |||||||    
T  41892918 taagctacttgaattagcttatcaaaacacgctataa 41892954  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 38684754 - 38684815
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||| || ||| ||||| |||||||||||||||||||||||||||||| | |||||||    
T  38684754 atgataagttataagctttaagctataagctacttgaattagcttatcaaaaaacgctataa 38684815  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 9198189 - 9198228
Alignment:
Q  88 aagttttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  9198189 aagttttaagctaaaagctacttgaattagcttatcaaaa 9198228  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 32109580 - 32109551
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  32109580 ctataagctacttgaattagcttatcaaaa 32109551  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 32326158 - 32326187
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  32326158 ctataagctacttgaattagcttatcaaaa 32326187  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 36879048 - 36879097
Alignment:
Q  88 aagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    ||||| ||| || |||||||||||||||||||||| |||| |||||||||    
T  36879048 aagttataagctctaagctacttgaattagcttataaaaaaatgctataa 36879097  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 2255352 - 2255282
Alignment:
Q  48 taagattac-agggtaaaattgagagaccatgataagctaaaagttttaacctataagctacttgaattag 117  Q
    ||||||||| ||| |||||||||||||  ||||||||||| ||||||||  |||||||||||||| |||||    
T  2255352 taagattacgaggataaaattgagagaaaatgataagctataagttttaggctataagctacttggattag 2255282  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 8014699 - 8014740
Alignment:
Q  86 aaaagttttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||||| ||| |||||||||| |||||||||||||||||||    
T  8014699 aaaagttataagctataagctaattgaattagcttatcaaaa 8014740  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 27679160 - 27679099
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    ||||||||||| ||| ||||| | ||||||||||||||||||||||| |||| | |||||||    
T  27679160 atgataagctataagctttaagccataagctacttgaattagcttattaaaaaacgctataa 27679099  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 44984341 - 44984374
Alignment:
Q  94 taacctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||||||    
T  44984341 taacctataagctacttgaattagcttatcaaaa 44984374  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 15804470 - 15804441
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  15804470 ctataagctacttgaattagcttatcaaaa 15804441  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 40909982 - 40909949
Alignment:
Q  94 taacctataagctacttgaattagcttatcaaaa 127  Q
    |||||||||| |||||||||||||||||||||||    
T  40909982 taacctataaactacttgaattagcttatcaaaa 40909949  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 31063016 - 31062980
Alignment:
Q  91 ttttaacctataagctacttgaattagcttatcaaaa 127  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31063016 ttttaagctataagctacttgaaatagcttatcaaaa 31062980  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 24432754 - 24432802
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattagcttatca 124  Q
    |||||||| || |||||||||  ||||||||||||||||||||||||||    
T  24432754 atgataagatataagttttaagttataagctacttgaattagcttatca 24432802  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 12473126 - 12473167
Alignment:
Q  76 atgataagctaaaagttttaacctataagctacttgaattag 117  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||    
T  12473126 atgataagctacaagctttaagctataagctacttgaattag 12473167  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 20988825 - 20988861
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaagatgcta 134  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20988825 ctataagctacttgaattagcttatcaaaaaatgcta 20988861  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 3535233 - 3535194
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  3535233 ctataagctacttgaattagcttatcaaaaaacgctataa 3535194  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 21501695 - 21501653
Alignment:
Q  85 taaaagttttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||| || ||| ||||||||||||||||||||||||||||||    
T  21501695 taaaaattataagctataagctacttgaattagcttatcaaaa 21501653  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 24418250 - 24418279
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  24418250 ctataagctacttgaattagcttatcaaaa 24418279  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 52831520 - 52831491
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  52831520 ctataagctacttgaattagcttatcaaaa 52831491  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 10518316 - 10518256
Alignment:
Q  77 tgataagctaaaagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    ||||||| || ||| ||||| ||||||||||||| |||||||||||||||| ||| |||||    
T  10518316 tgataagttataagctttaagctataagctacttaaattagcttatcaaaaaatgttataa 10518256  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 20004042 - 20004003
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  20004042 ctataagctacttgaattagcttatcaaaaaacgctataa 20004003  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 20791970 - 20792005
Alignment:
Q  92 tttaacctataagctacttgaattagcttatcaaaa 127  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20791970 tttaagctataagctacttgaattagcttatcaaaa 20792005  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 37131516 - 37131546
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaag 128  Q
    |||||||||||||||||||||||||||||||    
T  37131516 ctataagctacttgaattagcttatcaaaag 37131546  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 15942493 - 15942522
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  15942493 ctataagctacttgaattagcttatcaaaa 15942522  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 28736207 - 28736251
Alignment:
Q  93 ttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||| ||||| |||||||||||||||||||| ||| |||||||||    
T  28736207 ttaagctatacgctacttgaattagcttatctaaaaatgctataa 28736251  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 35272615 - 35272667
Alignment:
Q  85 taaaagttttaacctataagctacttgaattagcttatcaaaagatgctataa 137  Q
    |||||||| ||| | |||||||||| ||||||||||||||||| | |||||||    
T  35272615 taaaagttataagccataagctactggaattagcttatcaaaacaagctataa 35272667  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 339039 - 339068
Alignment:
Q  98 ctataagctacttgaattagcttatcaaaa 127  Q
    ||||||||||||||||||||||||||||||    
T  339039 ctataagctacttgaattagcttatcaaaa 339068  T

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