View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_3 (Length: 555)
Name: NF5257_low_3
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 89 - 366
Target Start/End: Original strand, 22199530 - 22199811
Alignment:
| Q |
89 |
ttttatatattaaaaaggttagaagataaataaaacttataataaactttcatgattatcaaagatttttatttgagatgtttcctgaggttaagttatt |
188 |
Q |
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| T |
22199530 |
ttttatatattaaaaaggttagaagataaataaaacttataatgaactttcatgattatcaaagatttttatttgagatgtttcctgaggttaagttatt |
22199629 |
T |
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| Q |
189 |
gattccgtgatgt---gagaaagagagatttgtatataaaaatatgtttgatttgaatttagattttattgcatatttaaacatcctaagatttatgtaa |
285 |
Q |
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| T |
22199630 |
gattccgtgatgtaaagagaaagagagatttgtatataaaaatatgtttgatttgaatttagattttattgcatatttaaacatcctaagatttatgtaa |
22199729 |
T |
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| Q |
286 |
tatctttgtataatatcaaacagatcgtcctaatatttgtgtacctcctcggttgg-ttagatcgtgccactaacgtattat |
366 |
Q |
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| T |
22199730 |
tatctttgtataatatcaaacaaatcgtcctaagatttgtgtaccttctcggttggtttagatcgtgccactaacgtattat |
22199811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 410 - 546
Target Start/End: Original strand, 22199847 - 22199983
Alignment:
| Q |
410 |
tagtattttttatgtatatgattctattacgaatgaaccatatttaattatagagaaatacaagagttcaggaatgaattaataggccatctgtttgatc |
509 |
Q |
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| T |
22199847 |
tagtattttttatgtatatgattctattacgaatgaaccaaatttaattatagagaaatacaagagttcgggaatgaattaataggccatctgtttgatc |
22199946 |
T |
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| Q |
510 |
caatgactaatgggcatccatccatcatatattcatc |
546 |
Q |
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| T |
22199947 |
caatgactaatgggcatccatccataatatattcatc |
22199983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22199177 - 22199260
Alignment:
| Q |
18 |
gtcacatcttggatgtgtaatatatacaaacatttgtt--tttatcattcatcgtttttgttctc-ttttaagattttatatat |
98 |
Q |
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| T |
22199177 |
gtcacatcttcgatgtgtaatatatacaaacatttgtttatttatcattcatcgtttttgttctctttttaagattttatatat |
22199260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 22166630 - 22166799
Alignment:
| Q |
18 |
gtcacatcttggatgtgtaatatatacaaacatttgtttttatcattcatcgtttttgttctcttttaagattttatatatt--aaaaaggttagaagat |
115 |
Q |
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| T |
22166630 |
gtcacatctttgatttgtaatatataccaatatttgtttttatcattcattatatttgttgtcttttgggattttatttattaaaaaaaggttaaaatat |
22166729 |
T |
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| Q |
116 |
aaat-aaaacttataataaactttcatgattatcaaagatttttatttgagatgtttcctgaggttaagt |
184 |
Q |
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| T |
22166730 |
aaataaaaacctttaatgaactttcatgatcttcaaagatttttgtttgatatgttttttaaggttaagt |
22166799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 22071157 - 22071053
Alignment:
| Q |
49 |
atttgtttttatcattcatcgtttttgttctcttttaagattttatatatta-aaaaggttagaagataaataaaa-cttataataaactttcatgatta |
146 |
Q |
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| T |
22071157 |
atttgtttttatcgttcatcctgtttgttatctttttagattttatttattagaaaaggttaaaagataaataaaaacctataataaactttcatgatta |
22071058 |
T |
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| Q |
147 |
tcaaa |
151 |
Q |
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| T |
22071057 |
tcaaa |
22071053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 22199986 - 22200036
Alignment:
| Q |
134 |
actttcatgattatcaaagatttttatttgagatgtttcctgaggttaagt |
184 |
Q |
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| T |
22199986 |
actttcatgcctatcaaagatttttatttgagatgattcctaaggttaagt |
22200036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 22349053 - 22349013
Alignment:
| Q |
127 |
ataataaactttcatgattatcaaagatttttatttgagat |
167 |
Q |
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| T |
22349053 |
ataatgaactttcatgatcatcaaagatttttatatgagat |
22349013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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