View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_4 (Length: 542)
Name: NF5257_low_4
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 121 - 507
Target Start/End: Original strand, 38262127 - 38262514
Alignment:
| Q |
121 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcattagtttgattcttacaattaagctaga |
220 |
Q |
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| T |
38262127 |
gtaattgattagactcgaaaatggacaaaacaacaaaaccaatttaattggatttttgggttcatggagtcattagtttgattcttacaattaagctaga |
38262226 |
T |
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| Q |
221 |
tgcataatataaatagcataaattttttgttgcaaattagtttaattcttacacttaacctaaatagcataaaatttgtgttgcatataatcatttaaag |
320 |
Q |
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| T |
38262227 |
tgcatagtataaatagcataatttttttgttgcaaattagtttaattcttacacttaacctaaatagcatgaaatttgtgttgcatataatcatttaaag |
38262326 |
T |
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| Q |
321 |
tttggaaaatagattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaacaa |
420 |
Q |
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| T |
38262327 |
tttggaaaatagattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaacaa |
38262426 |
T |
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| Q |
421 |
gttcatct-cctcaagctagaattttaaatacccaataagaatgttgtaagattcttctcacatgttttaatgttctagagggtcctt |
507 |
Q |
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| T |
38262427 |
gttcatctacttcaagctagaattttaaataaccaataagaatgttgtaagattcttctgacatgttttaatgttctagagggtcctt |
38262514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 38261870 - 38261989
Alignment:
| Q |
4 |
ttaagtagagtaaataaataaagacatgaaagtcctattgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttaga |
103 |
Q |
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| T |
38261870 |
ttaagtagagtaaataaataaagacatgaaagtcctattgtttagcactcctcaaactcacaaagcattaatgggaagcatcaagagtttgctggttaga |
38261969 |
T |
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| Q |
104 |
aagcgaaaatattcaacgta |
123 |
Q |
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| T |
38261970 |
aagcgaaaatgttcaacgta |
38261989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 38241104 - 38241192
Alignment:
| Q |
331 |
agattatatttcttacatactcttgtcttggttttagctattcaaatgagaaatcagaatcccgaaaatatgaggaagtgtcataaaca |
419 |
Q |
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| T |
38241104 |
agattctatttcatacaaaatcttgttttgtttctaggtattcaaatgagaaatcagaatcccgaaaatctgaggaagtgtcagaaaca |
38241192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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