View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5257_low_7 (Length: 439)
Name: NF5257_low_7
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 13447085 - 13446681
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13447085 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtat |
13446986 |
T |
|
| Q |
101 |
gaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13446985 |
gaatataggagttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaa |
13446886 |
T |
|
| Q |
201 |
aaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446885 |
aaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctga |
13446786 |
T |
|
| Q |
301 |
atttttattatttcagaaattgataatgt----taatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattga |
396 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446785 |
attttcattatttcagaaattgataatgttaattaatcaagaaactaataatgtacaacattttataggctgcaacgagtactttgaatggcattattga |
13446686 |
T |
|
| Q |
397 |
cacag |
401 |
Q |
| |
|
||||| |
|
|
| T |
13446685 |
cacag |
13446681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 13426425 - 13426027
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
13426425 |
ttcctgatagcttacctcttgatgttgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtat |
13426326 |
T |
|
| Q |
101 |
gaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaa |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
13426325 |
gaatataggcgttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagc |
13426226 |
T |
|
| Q |
201 |
aaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctga |
300 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || |
|
|
| T |
13426225 |
aaagaaaaggaagcgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgattcatttgattgatttgcga |
13426126 |
T |
|
| Q |
301 |
atttttattatttcagaaattgataatgttaatcaagaaactaatattgtacaacgtttt-ataggctgcaacgagtactttgaatggcattattgacac |
399 |
Q |
| |
|
| ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
13426125 |
a-tttcattatttcagaaatcgagaatgttaatcaagaaactaatattgtacaacgttttaataggctgcaatgggtactttgaatggtattatcgacac |
13426027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 13419534 - 13419135
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13419534 |
ttcctgatagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcctggtat |
13419435 |
T |
|
| Q |
101 |
gaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaa |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||| | |
|
|
| T |
13419434 |
gaatataggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcac |
13419335 |
T |
|
| Q |
201 |
aaggaaaaggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
13419334 |
aaagaaaaggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtatatgattcatttgattcatttgtga |
13419235 |
T |
|
| Q |
301 |
atttttattatttcagaaattgataatgttaatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacaca |
400 |
Q |
| |
|
| || | ||||| |||||||| |||| ||||||| |||||||||||||||||| ||| |||| |||||| | ||||||||||||| |||||||||||| |
|
|
| T |
13419234 |
a-ttaaaatattttagaaattggcaatggtaatcaataaactaatattgtacaacatttcatagactgcaatgggtactttgaatggtattattgacaca |
13419136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 13454027 - 13453764
Alignment:
| Q |
12 |
ttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggag |
111 |
Q |
| |
|
||||||||||||| || | |||||| ||||| ||||| | || || |||||||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
13454027 |
ttacctcttgatgcagctgctcctctcctttgtgctgggataaccgtatatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtg |
13453928 |
T |
|
| Q |
112 |
ttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaagga |
211 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||| || |||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
13453927 |
ttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaagga |
13453828 |
T |
|
| Q |
212 |
agcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggta |
275 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||| ||||||| |||||| | |||||| ||||| |
|
|
| T |
13453827 |
agcattagaacacttacgagcggactcatttctaataagccgtgatccaaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 13413177 - 13412958
Alignment:
| Q |
13 |
tacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagt |
112 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| ||||| ||||| || |||||||||||| || |||||||||||| ||||||||| | ||||||| || |
|
|
| T |
13413177 |
tacctcttgaatttgctggtcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgt |
13413078 |
T |
|
| Q |
113 |
tgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaa |
212 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||| || ||||||||| |
|
|
| T |
13413077 |
tgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaa |
13412978 |
T |
|
| Q |
213 |
gcaatagaacacttaggagc |
232 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13412977 |
gcaatagaacacttaggagc |
13412958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 13385424 - 13385623
Alignment:
| Q |
33 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
132 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| | |||||||||||||| |||||| | || | || ||||| ||||||||||| |||| |
|
|
| T |
13385424 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttg |
13385523 |
T |
|
| Q |
133 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
232 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
13385524 |
gtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc |
13385623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 13393676 - 13393851
Alignment:
| Q |
57 |
gtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgcta |
156 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||| | |
|
|
| T |
13393676 |
gtgtatagtcctcttcgatattttggactcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaa |
13393775 |
T |
|
| Q |
157 |
aagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
232 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||| || || || || || || |||||||||||| || ||||||| |
|
|
| T |
13393776 |
aagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagc |
13393851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 13389245 - 13389444
Alignment:
| Q |
33 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
132 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| ||| ||||||||| || |||||| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
13389245 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacctggtcttcgtataggtgttgttggtcttggtgggcttg |
13389344 |
T |
|
| Q |
133 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
232 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| | || || || |||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
13389345 |
gtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc |
13389444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13373276 - 13373039
Alignment:
| Q |
1 |
ttcctgatagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtat |
100 |
Q |
| |
|
|||||||| |||||| ||||||| || | |||||||||||| || || ||||||| ||||| ||| | | | |||||||||| ||||||||||| | |
|
|
| T |
13373276 |
ttcctgatgccttaccacttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggttt |
13373177 |
T |
|
| Q |
101 |
gaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaa |
200 |
Q |
| |
|
|| | || || || |||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| || || || || || || || ||||| |
|
|
| T |
13373176 |
acatgtgggtgtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaac |
13373077 |
T |
|
| Q |
201 |
aaggaaaaggaagcaatagaacacttaggagcagactc |
238 |
Q |
| |
|
|| | |||||||| || |||||||||||||| ||||| |
|
|
| T |
13373076 |
aaaaagaaggaagccattgaacacttaggagctgactc |
13373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 13379055 - 13378835
Alignment:
| Q |
18 |
cttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtag |
117 |
Q |
| |
|
||||||| ||||| |||||| ||||| ||||| ||||||||||||| || | | |||||||||| | ||||| ||||| || ||||||| || || | |
|
|
| T |
13379055 |
cttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttg |
13378956 |
T |
|
| Q |
118 |
gtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaat |
217 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || || ||||| ||||||| ||| || ||||| | ||||| || ||||| || | |||||||| || |
|
|
| T |
13378955 |
gtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccat |
13378856 |
T |
|
| Q |
218 |
agaacacttaggagcagactc |
238 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
13378855 |
tgaacgcttaggagctgactc |
13378835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 47601325 - 47601119
Alignment:
| Q |
32 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggactt |
131 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| || ||||||||||||| || ||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
47601325 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggactt |
47601226 |
T |
|
| Q |
132 |
ggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggag |
231 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| ||||||| |||| |||||||| |
|
|
| T |
47601225 |
ggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
47601126 |
T |
|
| Q |
232 |
cagactc |
238 |
Q |
| |
|
| ||||| |
|
|
| T |
47601125 |
ctgactc |
47601119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 28430712 - 28430767
Alignment:
| Q |
117 |
ggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28430712 |
ggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
28430767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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