View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_8 (Length: 430)
Name: NF5257_low_8
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 42470951 - 42470743
Alignment:
| Q |
1 |
aagagccaattactatgaaagaatgatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatg |
100 |
Q |
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| T |
42470951 |
aagagccaattactatgaaagaatgatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatg |
42470852 |
T |
|
| Q |
101 |
aatctatctttgtttactggctgagcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaaca-tttaacttgtgtaacaagcaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42470851 |
aatctatctttgtttactggctgagcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaacattttaacttgtgtaacaagcaa |
42470752 |
T |
|
| Q |
200 |
gcagagaag |
208 |
Q |
| |
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||||||||| |
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| T |
42470751 |
gcagagaag |
42470743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 42470678 - 42470539
Alignment:
| Q |
273 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42470678 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
42470579 |
T |
|
| Q |
373 |
tttatcagtacctgcacaaatgttttgaaccctacataag |
412 |
Q |
| |
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| T |
42470578 |
tttatcagtacctgcacaaatgttttgaaccctacataag |
42470539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 44692331 - 44692487
Alignment:
| Q |
25 |
gatggagatagtagtttatttggggttcctaagaacaatgatgacagaatctccacgaagaaacattttgcttatgaatctatctttgtttactggctga |
124 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||| |
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| T |
44692331 |
gatggagatactagcttatttggggttcctaagaacaatgatgacagaatctccacgaaggaacattttgctgatgaaacgatccttgttgactggctga |
44692430 |
T |
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| Q |
125 |
gcctttttctttcctttaccagtctttggaacctgatacaacacaagcaaaacattta |
182 |
Q |
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||||| |||||||||||||| ||||| || ||||||||| | ||||||| |||||||| |
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| T |
44692431 |
gccttcttctttcctttaccggtcttaggcacctgatac-atacaagcagaacattta |
44692487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 273 - 388
Target Start/End: Original strand, 44692559 - 44692674
Alignment:
| Q |
273 |
gcatacctcggtccacatttccctaacattttcaagaaccatattgcagtgcctatcgaaagccatgacacgacctagaagctttttgttgttccgacaa |
372 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
44692559 |
gcatacctcagtccacatttcccggacattttcaagaaccatattgcagtgtctatcaaaagccctgacacggcctagaagctttttgttgttacgacaa |
44692658 |
T |
|
| Q |
373 |
tttatcagtacctgca |
388 |
Q |
| |
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|| ||||| ||||||| |
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|
| T |
44692659 |
ttgatcagaacctgca |
44692674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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