View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5257_low_9 (Length: 415)
Name: NF5257_low_9
Description: NF5257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5257_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 25821146 - 25820754
Alignment:
| Q |
1 |
tacacagtcatcaagactctaaagaaacactttttcaggaactttcatggcaaccaagaaaacacattgtaatctcaaatactttaagaaaagatcaaat |
100 |
Q |
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| T |
25821146 |
tacacattcatcaagacactcaagaaacaatttttcaggatctttcttagcaaccaagaaaacacattgtaatctcaaatactttaagaaaagatcaaat |
25821047 |
T |
|
| Q |
101 |
ttt-agccgaaactcaatgaaccatcaagaagaataagaaaagtacacaaaggtgaaatnnnnnnngaataacttac-tgagcaaggaaacagcaccaaa |
198 |
Q |
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| T |
25821046 |
ttttagccgaaactcaatgaaccatcaagaagaataagaaaaatacacaaaggtgaaatcaaaaaagaataacttacatgagcaaggaaacagcaccaaa |
25820947 |
T |
|
| Q |
199 |
acttggtgaaggtttaaacaaacacaaataattcagaacacaccccttttcaggaattttcttagcatccaagaaagcacattacaatctcatataattt |
298 |
Q |
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| T |
25820946 |
acttggtgaaggtttagacaaacacaaataattcagaacacaccccttttcaggaattttcttggcatccaagaaaacacattgcaatctcatataattt |
25820847 |
T |
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| Q |
299 |
tagaaaagattgcatctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaagaagaacttacat |
392 |
Q |
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| T |
25820846 |
tagaaaa-attgcatctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaagaagaacttacat |
25820754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 31 - 395
Target Start/End: Complemental strand, 25815390 - 25815007
Alignment:
| Q |
31 |
tttttcaggaactttcatggcaaccaagaaaacacattgtaatctcaaatactttaagaaaagatcaaat-tttagccgaaactcaatgaaccatcaaga |
129 |
Q |
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| T |
25815390 |
tttttcagaaactttcttagcaaccaaaaaaacacattgtaatctcaaatgcttttagaaaagatcaattctttatacataactcaatgagccatcaagg |
25815291 |
T |
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| Q |
130 |
agaataagaaaagtacacaaaggtgaaatnnnnnnngaataacttac-tgagcaaggaaacagcaccaaaacttggtgaaggtttaa------------- |
215 |
Q |
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| |||| ||||| || | ||||||| ||| || | ||||| ||| ||||||||||||||||||||||||||||||||| | |
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| T |
25815290 |
ataataggaaaaatagataaaggtggaatcaaaaaacaagagcttacatgaacaaggaaacagcaccaaaacttggtgaaggttttagaaacactcttaa |
25815191 |
T |
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| Q |
216 |
----acaaacacaaataattcagaacacaccccttttcaggaattttcttagcatccaagaaagcacattacaatctcatataattttagaaaagattgc |
311 |
Q |
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| T |
25815190 |
taagacaaatacaaataattcagaacacaccttttttcaggaattttcttagcatccaagaaaacacattgcaatctcatataattttagaaaagatagc |
25815091 |
T |
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| Q |
312 |
atctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaagaagaacttacatgaa |
395 |
Q |
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| T |
25815090 |
atctttaggtgaaattcattgactcagcatgaagaataagaaaaatacataaatctagaattataatagaagaacttacatgaa |
25815007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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