View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258-Insertion-2 (Length: 656)
Name: NF5258-Insertion-2
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 253 - 508
Target Start/End: Original strand, 3077552 - 3077802
Alignment:
| Q |
253 |
taaaaatcttttcattcctcgccttctaaatcacccaaatagttgaatgccgaatgagcctaagacccttaaccaccttcttgttaaaacctccccacgt |
352 |
Q |
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| T |
3077552 |
taaaaatcttttcattcttcgccgtccaaatcacccaaatagttgcatgccaaatgagcctaagacccttaaccactttct----aaaacctccag-cgt |
3077646 |
T |
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| Q |
353 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaatcaacccacttaaacaactccaaccaaacccctctcgctaccgagcaatg |
452 |
Q |
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| T |
3077647 |
tccaacacgcccaatgattaaagacattttgaagcataataaacgagtaattgacccacttaaacaactccaaccaaacccctctcgctaccaagcaatg |
3077746 |
T |
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| Q |
453 |
cacaaagaggtgagttcatttttccgtatcgacttcacacaacgcacaagaaagca |
508 |
Q |
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| T |
3077747 |
cacagagaggtgagttcatttttccgtatcgacttcacacaacgcacaagaaagca |
3077802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 571 - 656
Target Start/End: Original strand, 3077829 - 3077917
Alignment:
| Q |
571 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac---cttctcctccacactccaattg |
656 |
Q |
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| T |
3077829 |
aaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacaccctcttctcctctacactccaattg |
3077917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 44692825 - 44692722
Alignment:
| Q |
522 |
agggcattcctcctactaagattgaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaa |
621 |
Q |
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| T |
44692825 |
agggcattccttctacgaagattccaccgcgtcggaatacgatcaagcaaaactttccaagaaagggccaccacttttgacggagccgggcttttccaaa |
44692726 |
T |
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| Q |
622 |
gttg |
625 |
Q |
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|||| |
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| T |
44692725 |
gttg |
44692722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 588 - 622
Target Start/End: Complemental strand, 15316260 - 15316226
Alignment:
| Q |
588 |
gccaccaccttagacggagccggacttttccaaag |
622 |
Q |
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| T |
15316260 |
gccacaaccttagacggagccggacttttccaaag |
15316226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 656
Target Start/End: Original strand, 34866382 - 34866504
Alignment:
| Q |
537 |
ctaagattgaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaacac-- |
634 |
Q |
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| T |
34866382 |
ctaagattcaatcgcgacggaatacgatcaagcaagactttccaagaaagggccaccacttttgagggggccgggcttttccaaagttggagaaacactc |
34866481 |
T |
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| Q |
635 |
-cttctcctccacactccaattg |
656 |
Q |
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| T |
34866482 |
tcaactcctccacactccaattg |
34866504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 14248764 - 14248813
Alignment:
| Q |
577 |
tccacgaaagtgccaccaccttagacggagccggacttttccaaagttgg |
626 |
Q |
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| T |
14248764 |
tccaagaaagagccaccgccttagacggagccggactcttccaaatttgg |
14248813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 5008679 - 5008743
Alignment:
| Q |
567 |
agcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
631 |
Q |
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| T |
5008679 |
agcaaaaccttccaagagagtgccaccaccttcaaaggagccggattcttccaaagttgcgtaaa |
5008743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 631
Target Start/End: Original strand, 47337317 - 47337409
Alignment:
| Q |
539 |
aagattgaaccgcgtcgggatacgatcaagcaaaaccctccacgaaagtgccaccaccttagacggagccggacttttccaaagttgggtaaa |
631 |
Q |
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| T |
47337317 |
aagattcaaacgggtcggtatacgattaagcaaagatctccaagagagcgccaccaccttagaaggagccgggctcttccaaacttggctaaa |
47337409 |
T |
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