View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258-Insertion-3 (Length: 398)
Name: NF5258-Insertion-3
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 31114414 - 31114024
Alignment:
| Q |
8 |
taacgaaccattggttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtcagcggccaccgtgtcagtggtgtttgtttgaa |
107 |
Q |
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| T |
31114414 |
taacgaaccatttgttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtcagcggccactgtgtcagtggcgtttgtttgaa |
31114315 |
T |
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| Q |
108 |
cttgaggaagtggaagaagaatgatagagctttgcgaagttcctcctacacgatatattttctctcaatttttgttgttttctatcagcgtcgtatgtat |
207 |
Q |
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| T |
31114314 |
cttgaggaagtggaagaagaatgatagagctttgcgaagttcctcctacacgatatattttctcccaatttttgttgttttctatcagcgtcgtatgtat |
31114215 |
T |
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| Q |
208 |
tcaataatgcatgaaatttgtttaatgtaacacaagcttacataaatcaaaatttggatgatgttcataataaacccaacgagtgaagccttacatgtac |
307 |
Q |
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| T |
31114214 |
tcaataatgcatgaaatttgtttaatgtaacacaagcttacattaatcaaaatttggatgatgttcataataaacccaacgagtgaagccttacatgtac |
31114115 |
T |
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| Q |
308 |
acacaagcgcgctactgtattatttctcctttttcttgaaccttaccatattttcattttttgctgctaacgtacgttgaaataattttga |
398 |
Q |
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| T |
31114114 |
acacaagcgcgctactgtattatttctcctttttcttgaaccttaccatattttcattttttgctactaacgtaggttgaaataattttga |
31114024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31088340 - 31088287
Alignment:
| Q |
22 |
ttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtc |
75 |
Q |
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|||| ||||||||||||||| ||||||||||||||| |||||| ||||||||| |
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| T |
31088340 |
ttcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtc |
31088287 |
T |
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