View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258-Insertion-4 (Length: 345)
Name: NF5258-Insertion-4
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 30520820 - 30520485
Alignment:
| Q |
8 |
cttagtttcctgtttttatgaatcacattacttggtaatacaagtgaatatagtggttatagatttgtcaacttgttaatagcctgggtcatatcttaac |
107 |
Q |
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| T |
30520820 |
cttagtttcctgtttttatgaatcacattacttggtaatacaagtgaatatagtggttatagatttgtcaacttgttaatagcctggatcatatcttaac |
30520721 |
T |
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| Q |
108 |
atgtctagttgttgtaagagacagaatgttggatttggattgcctggaatcaacaattccatgcacacattcacgcacatcggtggctattagattgagg |
207 |
Q |
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| T |
30520720 |
atgtctagttgttgtaagagacagaatgttggatttggattgcctggaatcaacaattccatgcacacattcacgcacatcggtgactattagattgagg |
30520621 |
T |
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| Q |
208 |
tcggacggtctatgtttcaagctcggtattttatatttattaaaaaacatcaaaatctgcaatgaaatctagactgtctgatcttaatccaatgattatc |
307 |
Q |
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| T |
30520620 |
tcggacggtctatgtttcaagctcggtattttatatttattaaaaaacatcaaaatctgcaatgaaatctagactgtctgatctcaatccaatgattatc |
30520521 |
T |
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| Q |
308 |
aatgtgctgactatgtgaatgcttggaattgtgact |
343 |
Q |
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| T |
30520520 |
aatgtgctgactatgtgaatgcttggaattgtgact |
30520485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 37108012 - 37107885
Alignment:
| Q |
200 |
gattgaggtcggacggtctatgtttcaagctcggtattttatatttattaaaaaacatcaaaatctgcaatgaaatctagactgtctgatcttaatccaa |
299 |
Q |
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| T |
37108012 |
gattgagattggatggtccatgtttaatgcttggtattttagatttaagaaaaaa-atcaaaatctgtattgtaacctagaccatgtgatctcaatccaa |
37107914 |
T |
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| Q |
300 |
tgattatcaatgtgctgactatgtgaatg |
328 |
Q |
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| T |
37107913 |
cgaccatcaatgtgttgactatgtgaatg |
37107885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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