View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258-Insertion-5 (Length: 250)
Name: NF5258-Insertion-5
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-5 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 52721551 - 52721311
Alignment:
| Q |
10 |
ctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52721551 |
ctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccat |
52721452 |
T |
|
| Q |
110 |
agttattgtgggtattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaag |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52721451 |
agttattgtgggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaag |
52721352 |
T |
|
| Q |
210 |
aaaaaccaattaaagaaagcgtatttctgttggacttcttt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52721351 |
aaaaaccaattaaagaaagcgtatttctgttggacttcttt |
52721311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 52712730 - 52712490
Alignment:
| Q |
10 |
ctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
52712730 |
ctacaataacctgaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgt |
52712631 |
T |
|
| Q |
110 |
agttattgtgggtattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaag |
209 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
52712630 |
agttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaag |
52712531 |
T |
|
| Q |
210 |
aaaaaccaattaaagaaagcgtatttctgttggacttcttt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52712530 |
aaaaaccaattaaagaaagcgtatttcttttggacttcttt |
52712490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 52698911 - 52698671
Alignment:
| Q |
10 |
ctacaataacctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccat |
109 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | | |
|
|
| T |
52698911 |
ctacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgt |
52698812 |
T |
|
| Q |
110 |
agttattgtgggtattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaag |
209 |
Q |
| |
|
|||||||||||||| | ||| |||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | ||||| |||||| |||||| |
|
|
| T |
52698811 |
agttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaag |
52698712 |
T |
|
| Q |
210 |
aaaaaccaattaaagaaagcgtatttctgttggacttcttt |
250 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
52698711 |
taaaaccaattaaagaaagagaatttcatttggacttcttt |
52698671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University