View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258-Insertion-6 (Length: 244)
Name: NF5258-Insertion-6
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 25821601 - 25821838
Alignment:
| Q |
8 |
gatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctc |
107 |
Q |
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| T |
25821601 |
gatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctc |
25821700 |
T |
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| Q |
108 |
atgattggacagaatgtccctttgctcattct-gggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttca |
206 |
Q |
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| T |
25821701 |
atgattggacagaatgtccctttgctcattctggggaaatcgcaaggcgccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttca |
25821800 |
T |
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| Q |
207 |
gaatggatcatgcagtaaagggga-acatgtcaatatg |
243 |
Q |
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| T |
25821801 |
gaatggatcatgcagtaaaggggatacatgtcaatatg |
25821838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 25812582 - 25812795
Alignment:
| Q |
13 |
atccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctcatgat |
112 |
Q |
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| T |
25812582 |
atccctacctgacataaacaatgagatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggtta----ttctcatgat |
25812677 |
T |
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| Q |
113 |
tggacagaatgtccctttgctcattctgggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaatgg |
212 |
Q |
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| T |
25812678 |
tggactgagtgcccctttgttcatccaggggaaacgcaaggcgccgtgattcgaggaaatatcattacacatgtgtcccttgccccgagtttcggaaggg |
25812777 |
T |
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| Q |
213 |
atcatgcagtaaagggga |
230 |
Q |
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| T |
25812778 |
atcatgtagaaaagggga |
25812795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 25818242 - 25818317
Alignment:
| Q |
8 |
gatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagc |
83 |
Q |
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|||| |||| |||||| |||||| |||||| |||||| ||||||||||||||||||| | |||||||| ||||| |
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| T |
25818242 |
gatccatccatacctggcataaaaaatgagatatatagcacagatgaatttaggatgtttgcattcaaagggaagc |
25818317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 33647774 - 33647905
Alignment:
| Q |
8 |
gatcgatccctacctgacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctc |
107 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||||||||| ||| ||| ||| | | | ||| |
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| T |
33647774 |
gatccatccctacctgacataaagaatggaatatatagtacagatgaatttaggatgtttacattcaaagtgaagccttgttcaagggctta---ttctc |
33647870 |
T |
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| Q |
108 |
atgattggacagaatgtccctttgctcattctggg |
142 |
Q |
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| T |
33647871 |
atgattggactgagtgcccctttgttcatcctggg |
33647905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 30122217 - 30122419
Alignment:
| Q |
23 |
gacataaagaatgaggtatatattacagatgaatttaggatgtataaattcaaagtgaagctttgctcatgggataatgctcctcatgattggacagaat |
122 |
Q |
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||||| ||||||| | |||||| ||| ||||| ||||||||||||| |||||||||||||| ||| ||| ||| | | | ||||||||||||| || | |
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| T |
30122217 |
gacattaagaatgggatatatagtaccgatgagtttaggatgtatacattcaaagtgaagccttgttcaagggctta---ttctcatgattggaccgagt |
30122313 |
T |
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| Q |
123 |
gtccctttgctcattc-tgggaaatcacaaggcaccgtgatccgaagaaatattattacagctgtgtccattgtcatgaatttcagaatggatcatgcag |
221 |
Q |
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| T |
30122314 |
gtccttttgttcatccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtcccttgtcctgagtttcggaaaggatcttgcag |
30122413 |
T |
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| Q |
222 |
taaagg |
227 |
Q |
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|||||| |
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| T |
30122414 |
taaagg |
30122419 |
T |
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