View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258-Insertion-8 (Length: 124)
Name: NF5258-Insertion-8
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258-Insertion-8 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 1e-57; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 7699282 - 7699166
Alignment:
| Q |
8 |
aaatattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaataac |
107 |
Q |
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| T |
7699282 |
aaatattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttgaaaaaagaac |
7699183 |
T |
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| Q |
108 |
tttgttggggtatccca |
124 |
Q |
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| T |
7699182 |
tttgttggggtatccca |
7699166 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 7726190 - 7726104
Alignment:
| Q |
11 |
tattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttg |
97 |
Q |
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| T |
7726190 |
tattcataagaagcatcaccttcggtaaatattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttg |
7726104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 7711302 - 7711216
Alignment:
| Q |
11 |
tattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttg |
97 |
Q |
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| T |
7711302 |
tattcataagaagcatcaccttcagtaaatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttg |
7711216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 7733612 - 7733526
Alignment:
| Q |
11 |
tattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttg |
97 |
Q |
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| T |
7733612 |
tattcataagaagcatcaccatcggtaaatattggagcagtgctaaagggattaataacaagaggaactttagtgagttgaaacttg |
7733526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 7746287 - 7746376
Alignment:
| Q |
8 |
aaatattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggttaataacaagaggaattttagtgagttgaaacttg |
97 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
7746287 |
aaatattcataagaagcatcaccttgggaaaatattggagcagtgctaaaggggttaataataagaggaatagtagtgagtttaaacttg |
7746376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 7703988 - 7703933
Alignment:
| Q |
8 |
aaatattcataagaagcatcacctttagtaaatattggagcagtgctaaaggggtt |
63 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
7703988 |
aaatattcataaaaagcatcacctttaccagatattggagcagtgctaaaggggtt |
7703933 |
T |
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