View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5258_high_1 (Length: 803)
Name: NF5258_high_1
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 5 - 793
Target Start/End: Complemental strand, 25031295 - 25030490
Alignment:
| Q |
5 |
ccatcacttgtgattatgcgtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttcc |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25031295 |
ccatcacttgtgattatgcgcacaagcagtggccacttcgcacccccgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttcc |
25031196 |
T |
|
| Q |
105 |
ctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttgctttatttaaattaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25031195 |
ctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttgctttatttaaattaat |
25031096 |
T |
|
| Q |
205 |
ttttggtctatctacctatgtatgtatatctctctctatatacacacaaatataattgagtcattgtgtcccttgttgctgctaggaggaaccatcacct |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
25031095 |
ttttggtctatctacctatgtatgtatatatctctctatatacacagaaatataattgagtcattgtgtcccttgttgctgttaggaggaaccatcactt |
25030996 |
T |
|
| Q |
305 |
ttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030995 |
ttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagc |
25030896 |
T |
|
| Q |
405 |
tggcatttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgatacatcaatggacctaactagcaagaactgttctat |
504 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25030895 |
tggcatttgctgaatatgttttgcagaacggacttgttttacacacaatgctcgtttttttcgatacatcaatggacctaactaacaagaactgttctat |
25030796 |
T |
|
| Q |
505 |
cagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtgtgttaaactaatgatgattaaga |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030795 |
cagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtgtgttaaactaatgatgattaaga |
25030696 |
T |
|
| Q |
605 |
cggggtttcatttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttagatagttagtgtctaataagctcactaaattatag |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25030695 |
cggggtttcatttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttagatagttagtgtctaataagctcactaagttatag |
25030596 |
T |
|
| Q |
705 |
aatcttgtactaatttcaata-----------------cttttgaaattttttctcaaaccccaagctcacaagcttcctttttcccttcctctcctcat |
787 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030595 |
aatcttgtactaatttcaataccttttcaatgtggttccttttgagaatttttctcaaaccccaagctcacaagcttcctttttcccttcctctcctcat |
25030496 |
T |
|
| Q |
788 |
cctttg |
793 |
Q |
| |
|
|||||| |
|
|
| T |
25030495 |
cctttg |
25030490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 581
Target Start/End: Original strand, 20507024 - 20507597
Alignment:
| Q |
24 |
gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt |
123 |
Q |
| |
|
|||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
20507024 |
gtacaagcagaagccgcttcgcagccccattctaaattatccagaattttgcaatttgcaccatctaaagttcattattccctgcttcaacacgaatctt |
20507123 |
T |
|
| Q |
124 |
ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttgc------------tttatttaaattaatttttggt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || | |||||| |||||||||| |
|
|
| T |
20507124 |
ctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataattcagagtagcaaggtttgtagagttctcaggttaaattaaatcaatttttggt |
20507223 |
T |
|
| Q |
212 |
-ctatctacctatgtatgtatatctc---tctctatatacacacaaatataattgagtcattgtgtcccttgttgctgctaggaggaaccatcaccttta |
307 |
Q |
| |
|
|| |||| |||| |||||| | | | |||||| || ||||||||||||||||||||||| ||||||||| |||||| |||| ||||||| | |
|
|
| T |
20507224 |
tctgtctatgtatgcatgtatgtattatgtatctatagacgtgcaaatataattgagtcattgtgtggcttgttgcttctaggatgaactgtcaccttca |
20507323 |
T |
|
| Q |
308 |
agaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctgg |
407 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20507324 |
agaacatgggagccaaagtcaacatcagttcctaaatgtcttgaatcccacctgacctatattcatatagaaggatatcaaggatttgaagatgagctgg |
20507423 |
T |
|
| Q |
408 |
catttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgatacatcaatggacctaactagcaagaactgttctatcag |
507 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||| |||||||||||| | | ||||||||||||||||| |
|
|
| T |
20507424 |
catttgctgaatatattttgcgtaacggaattgttttacacacaatgctcatttttttcgatacttcaatggacctatcaaacaagaactgttctatcaa |
20507523 |
T |
|
| Q |
508 |
aagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtg |
581 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
20507524 |
aagcttaactgatataccaaggggctctgtcacatgccaacttaaatttgactcagctgtgtcttcataaggtg |
20507597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 23 - 558
Target Start/End: Complemental strand, 25896016 - 25895469
Alignment:
| Q |
23 |
cgtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtct |
122 |
Q |
| |
|
||||||| |||| |||||||| || |||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||| |||||| || | | |
|
|
| T |
25896016 |
cgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgt |
25895917 |
T |
|
| Q |
123 |
tctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttgct------------ttatttaaattaatttttgg |
210 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||||| ||||||| || | |||||||| | ||| |||||| ||||||||| |
|
|
| T |
25895916 |
cttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttgg |
25895817 |
T |
|
| Q |
211 |
tctatctacctatgtatgtatatctctctctatatacacacaaatataattgagtcattgtgtcccttgttgctgctaggaggaaccatcacctttaaga |
310 |
Q |
| |
|
| | | | |||| |||||| | ||| |||||| ||| | | |||| ||||| || |||| ||||||| || |||||| ||| ||||||||||||| |
|
|
| T |
25895816 |
tatgttcatgtatgcatgtatgtatctatctatacacaaaaatatatttttgagggatgttgtctcttgttgttggtaggagaaactatcacctttaaga |
25895717 |
T |
|
| Q |
311 |
acatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcat |
410 |
Q |
| |
|
|||||| ||||| |||||||||| |||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
25895716 |
acatggcagccagagtcaacaacggttcctgaatgtctcaaatcccacctgacctatattcacatagaaggatatcaaggatttgaagacgagcttacat |
25895617 |
T |
|
| Q |
411 |
ttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgatacatcaatggacctaactagcaagaactgttctatcagaag |
510 |
Q |
| |
|
||||||||||| || || |||||||||||||||| || |||||||| ||||| |||||| || ||| | ||| | |||| ||| ||| |
|
|
| T |
25895616 |
ttgctgaatatcttctgaggaacggacttgttttgcaaacaatgcttatttttgttgatacttcaatgcacacaacgaataagtatctttctgtcaaaag |
25895517 |
T |
|
| Q |
511 |
attaactgatataccaaggggctctgtcacatgccaacttaaatttga |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25895516 |
attaactgatataccaaggggctctgtcacctgccaacttaaatttga |
25895469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 270 - 574
Target Start/End: Original strand, 30078752 - 30079056
Alignment:
| Q |
270 |
gtgtcccttgttgctgctaggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttat |
369 |
Q |
| |
|
||||||||||||| | |||||||||||| ||| || ||||||||||||||| |||||||||||||| | ||||| |||||||||||||||| | ||| |
|
|
| T |
30078752 |
gtgtcccttgttgattttaggaggaaccacgaccattgagaacatgggagccagagtcaacaacagtttttgaatgtctcaaatcccacctgacttatat |
30078851 |
T |
|
| Q |
370 |
tcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgat |
469 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || | |||||||| ||| |
|
|
| T |
30078852 |
tcacatagaaggatatcaaggattggaagatgagctggcatttgctgactatattttgcggaacggacttgtattgaagacaatgcttatttttgttgat |
30078951 |
T |
|
| Q |
470 |
acatcaatggacctaactagcaagaactgttctatcagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgt |
569 |
Q |
| |
|
| ||||||||| ||| | |||| | |||||| ||| |||||||||||| ||||||| ||||||||| ||||| ||||||||||||| ||||| ||| |
|
|
| T |
30078952 |
atttcaatggacaaaacaaacaagtattgttctctcaaaagattaactgacataccaaagggctctgttacatgtgaacttaaatttgacccagctctgt |
30079051 |
T |
|
| Q |
570 |
ctcca |
574 |
Q |
| |
|
||||| |
|
|
| T |
30079052 |
ctcca |
30079056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 221 - 444
Target Start/End: Original strand, 25924036 - 25924258
Alignment:
| Q |
221 |
tatgtatgtatatctctctctatatacacacaaatataattgagtcattgtgtcccttgttgctgctaggaggaaccatcacctttaagaacatgggagc |
320 |
Q |
| |
|
|||| |||||||| ||| | |||| ||| |||||||| |||||||| ||||||||||||||| |||||||||| ||||| |||||||||| ||||| |
|
|
| T |
25924036 |
tatgcatgtatatatctatatatacacaatcaaatata-ttgagtcacggtgtcccttgttgctaataggaggaacactcaccgttaagaacattggagc |
25924134 |
T |
|
| Q |
321 |
caaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaata |
420 |
Q |
| |
|
|| |||||| |||||||||| |||| ||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
25924135 |
cacagtcaataacagttcctggatgtctcaaatcccacctaacctatattcagatagaaggatatcaaggatgtgaagatgagttggcatttgctgaata |
25924234 |
T |
|
| Q |
421 |
tgttttgcggaacggacttgtttt |
444 |
Q |
| |
|
| |||||||||| ||||||||||| |
|
|
| T |
25924235 |
tattttgcggaatggacttgtttt |
25924258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 249 - 580
Target Start/End: Original strand, 26038485 - 26038816
Alignment:
| Q |
249 |
cacaaatataattgagtcattgtgtcccttgttgctgctaggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgttt |
348 |
Q |
| |
|
|||| ||||| ||||||||| ||| || |||| ||| |||||||||||||| ||||| |||||||||||||| | |||||||| ||||||| |||| | |
|
|
| T |
26038485 |
cacatatatatttgagtcatcttgttccatgtttctggtaggaggaaccatcgtctttacgaacatgggagccacaatcaacaactgttcctagatgtct |
26038584 |
T |
|
| Q |
349 |
caaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaacggacttgttttacac |
448 |
Q |
| |
|
|| ||||||||||| | |||| ||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||||| |||||||||||||| | |
|
|
| T |
26038585 |
catatcccacctgaagtatatttgcatagaaggatatcaaggatttgaagacgagctgacatttgccgaatttattttgcgtaacggacttgttttggag |
26038684 |
T |
|
| Q |
449 |
acaatgctcgnnnnnnncgatacatcaatggacctaactagcaagaactgttctatcagaagattaactgatataccaaggggctctgtcacatgccaac |
548 |
Q |
| |
|
|||||||| || | ||| ||||| |||| | |||| || ||||||||| ||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
26038685 |
acaatgcttatttttgttgacatttcattggacataacaaacaagtaccgttctatcaaaagattaacaaatataccaaggggctctgtcacttgccaac |
26038784 |
T |
|
| Q |
549 |
ttaaatttgattcagctgtgtctccataaggt |
580 |
Q |
| |
|
|||| |||||| ||| || |||||| |||||| |
|
|
| T |
26038785 |
ttaactttgatgcagatgggtctccttaaggt |
26038816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 277 - 444
Target Start/End: Original strand, 26034637 - 26034804
Alignment:
| Q |
277 |
ttgttgctgctaggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacata |
376 |
Q |
| |
|
||||||||| |||||||||||| |||| || ||||||||| | | ||||||||||||||| || ||||| |||||||||||||||||| | |||||||| |
|
|
| T |
26034637 |
ttgttgctggtaggaggaaccaccaccattgagaacatggcaactgaagtcaacaacagtttctgaatgtctcaaatcccacctgacctatgttcacata |
26034736 |
T |
|
| Q |
377 |
gaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaacggacttgtttt |
444 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
26034737 |
gaagggtatcaaggacttgaatatgagctgacatttgctgaatatattttgcagaacggacttgtttt |
26034804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 24489451 - 24489615
Alignment:
| Q |
24 |
gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt |
123 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||| || || |||| |||||||||||||||||||||||||||| || | ||||||| | |||| |
|
|
| T |
24489451 |
gtacaagcagtggccgcttcatgcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctccctttcttcaactcaaatctt |
24489550 |
T |
|
| Q |
124 |
ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg |
188 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24489551 |
ctgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagagtagcaaggtttg |
24489615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 24525347 - 24525511
Alignment:
| Q |
24 |
gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt |
123 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||||||||| ||| | |||| |
|
|
| T |
24525347 |
gtacaaccagtggccacttcattcccatgttctaaactatccagagtttcgcaaattagatcgtctaaagttcattcttccctgctttaactcaaatctt |
24525446 |
T |
|
| Q |
124 |
ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||| || || ||||||||||| |
|
|
| T |
24525447 |
ctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataatccaaagcagcaaggtttg |
24525511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 30078485 - 30078647
Alignment:
| Q |
24 |
gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt |
123 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
30078485 |
gtacatgcagttgccacttcatgcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaactcgaatctt |
30078584 |
T |
|
| Q |
124 |
ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtt |
186 |
Q |
| |
|
||| || ||| ||||| |||||||| |||||| ||||||| ||||| |||| ||||||||| |
|
|
| T |
30078585 |
ctggtcgacgctcttgaaaaatgccacgtgcttcgagttctcataattaagagcagcaaggtt |
30078647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 26034388 - 26034524
Alignment:
| Q |
49 |
cctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgcc |
148 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||| |||||||||||||| || |||||| | ||||||| || |||||||||||||||||| |
|
|
| T |
26034388 |
cctgttctaaattatcctgaatttcacgatttacatcatctgaagttcattcttccatgtttcaactcaaatcttctggtccacgtgcttgagaaatgcc |
26034487 |
T |
|
| Q |
149 |
atatgcttcaagttctcttaattcagagtagcaaggt |
185 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||| |
|
|
| T |
26034488 |
gcatgcttcaagttctcataattcagagcaacaaggt |
26034524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 24525612 - 24525721
Alignment:
| Q |
270 |
gtgtcccttgttgctgctaggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttat |
369 |
Q |
| |
|
||||||||||||| || ||||||||| | |||| || ||||||||| |||| ||||||||| |||| || ||||| |||| ||||||||||||| ||| |
|
|
| T |
24525612 |
gtgtcccttgttgttggcaggaggaacaaccaccattgagaacatggcagccggagtcaacaagagtttctgaatgtctcaagtcccacctgacctatat |
24525711 |
T |
|
| Q |
370 |
tcacatagaa |
379 |
Q |
| |
|
|||||||||| |
|
|
| T |
24525712 |
tcacatagaa |
24525721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 24942490 - 24942579
Alignment:
| Q |
87 |
tctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagag |
176 |
Q |
| |
|
||||||||| ||||| |||||||| ||| || |||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24942490 |
tctaaagttgattctaccctgctttaactcgaatcttttgctaaacatgcttgagaaatgccatatgcttcaagttcttataattcagag |
24942579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 25923749 - 25923901
Alignment:
| Q |
24 |
gtacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtctt |
123 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||||||||||| || ||||||||| || |||| |
|
|
| T |
25923749 |
gtacaagcagtggacacttcatgcccctgttctagattatccagaatttcgccaattaaatcatataaagttcattctcccttgcttcaactcgaatctt |
25923848 |
T |
|
| Q |
124 |
ctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagag |
176 |
Q |
| |
|
|| ||| ||||| | ||||| |||||||| || ||||| |||||||||| |
|
|
| T |
25923849 |
cttgtcactgtgctccataaatgtgatatgcttaaatttctcataattcagag |
25923901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 707
Target Start/End: Original strand, 20507634 - 20507764
Alignment:
| Q |
585 |
taaactaatgatgattaagacggggtttcatttgcacggttagacgtgtttcatgatataagtttgttagcttttctgttagttag--------atagtt |
676 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| | |||| | ||||| ||||||||||||||| |||| ||||||||| |||||| ||| ||||| |
|
|
| T |
20507634 |
taaattaatgatggttaagactgggtttcgtctgcatgattagaagtgtttcatgatataggtttcttagcttttatgttagatagttagtgatgtagtt |
20507733 |
T |
|
| Q |
677 |
agtgtctaataagctcactaaattatagaat |
707 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
20507734 |
ggtgtctaaaaagctcactaaattatagaat |
20507764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 648 - 725
Target Start/End: Original strand, 24489694 - 24489771
Alignment:
| Q |
648 |
ttgttagcttttctgttagttagatagttagtgtctaataagctcactaaattatagaatcttgtactaatttcaata |
725 |
Q |
| |
|
|||||||||||||||||||| | | || ||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24489694 |
ttgttagcttttctgttagtgatgcaaatattgtctaataagctcactaaattatagaattttgtactaattttaata |
24489771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 26038248 - 26038369
Alignment:
| Q |
25 |
tacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttc |
124 |
Q |
| |
|
|||| |||||||||||||| ||||||| | ||||||||||||||| || |||| | ||||||||||||| ||||||||| || ||| | | ||| |
|
|
| T |
26038248 |
tacatgcagtggccacttcaagtccctgttattaattatccagaatttcgctctttagaacatctaaagttcactcttccctgttttaactcaactattc |
26038347 |
T |
|
| Q |
125 |
tgctcaacgtgcttgagaaatg |
146 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
26038348 |
tggtcaacgtgcttgagaaatg |
26038369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 288 - 581
Target Start/End: Original strand, 17772991 - 17773285
Alignment:
| Q |
288 |
aggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatca |
387 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| || ||||| | ||||| | ||||||||||||||||||||| |
|
|
| T |
17772991 |
aggaggaaccgtcgccttttggaacatgggagccaaagtcaacaatagttcctaaatgtctcgaatccaatctgacatatattcacatagaaggatatca |
17773090 |
T |
|
| Q |
388 |
aggatttgaa-gatgagctggcatttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgatacatcaatggacctaac |
486 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| | ||||| |||||||||||||| ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
17773091 |
aggatttgaaggaggacctggcatttgctgaatatatcttgcgtaacggacttgttttgcacacaatgcttatatttttcgatacttcaatggatctaac |
17773190 |
T |
|
| Q |
487 |
tagcaagaactgttctatcagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctccataaggtg |
581 |
Q |
| |
|
|| |||| | |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
17773191 |
taacaagtatcgttccctcaaaagattaaccgatataccaaggggctctgtcacatgccaacttaaatttgattcaactgtgtctccttaaggtg |
17773285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 17772753 - 17772908
Alignment:
| Q |
33 |
gtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaac |
132 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| | |
|
|
| T |
17772753 |
gtggccactttgcacccccattctaaattatccagaatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgctgggc |
17772852 |
T |
|
| Q |
133 |
gtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg |
188 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
17772853 |
gtgcttgagaaatgccacatgcttcaagttctcctaattcagagttgcaaggtttg |
17772908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 273 - 581
Target Start/End: Original strand, 36162632 - 36162940
Alignment:
| Q |
273 |
tcccttgttgctgctaggaggaaccatcacctttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattca |
372 |
Q |
| |
|
|||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||||||| || ||||| ||||||| ||| |||| | |||||| |
|
|
| T |
36162632 |
tcccttgttgcttataggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattca |
36162731 |
T |
|
| Q |
373 |
catagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaacggacttgttttacacacaatgctcgnnnnnnncgataca |
472 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||| |||| |
|
|
| T |
36162732 |
tttagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggactttttttgaagacaatgcttatttttgttgatatt |
36162831 |
T |
|
| Q |
473 |
tcaatggacctaactagcaagaactgttctatcagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctc |
572 |
Q |
| |
|
||||||||| || |||| |||| ||| ||| |||||||||||| ||||||||||||||| ||| || |||||| ||||||| ||||||| |||| |
|
|
| T |
36162832 |
tcaatggacaaaaaggacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctc |
36162931 |
T |
|
| Q |
573 |
cataaggtg |
581 |
Q |
| |
|
| ||||||| |
|
|
| T |
36162932 |
cttaaggtg |
36162940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 36162394 - 36162557
Alignment:
| Q |
25 |
tacaagcagtggccacttcgcacccctgttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttc |
124 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| ||||||| |||||| || ||||||||||| | ||||| ||||||| || || ||| | ||| | |
|
|
| T |
36162394 |
tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttctatgttttaactcaaatctgc |
36162493 |
T |
|
| Q |
125 |
tgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattcagagtagcaaggtttg |
188 |
Q |
| |
|
|| | | || |||||| ||||||| ||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
36162494 |
tgggccatgttcttgagcaatgccacatgcttcaagttctcataattcagagcaacaaggtttg |
36162557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 307 - 444
Target Start/End: Complemental strand, 45795614 - 45795477
Alignment:
| Q |
307 |
aagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctg |
406 |
Q |
| |
|
|||||||||| || | |||||||||| ||| |||||| ||||||||||| ||| || | ||||||||||||||||||||| | ||||||||||| || |
|
|
| T |
45795614 |
aagaacatggcagttagagtcaacaactgttttcaaatgtctcaaatcccacttgaactatgttcacatagaaggatatcaagaacttgaagatgaggtg |
45795515 |
T |
|
| Q |
407 |
gcatttgctgaatatgttttgcggaacggacttgtttt |
444 |
Q |
| |
|
||||||| |||||| ||||||||| | ||||||||| |
|
|
| T |
45795514 |
tcatttgccgaatatattttgcggagcatacttgtttt |
45795477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 433
Target Start/End: Original strand, 45793821 - 45793912
Alignment:
| Q |
342 |
aatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaac |
433 |
Q |
| |
|
||||| |||||| |||| |||||||| || ||||||||||||||||| || ||||||||||| || ||||||||||||| ||||| ||||| |
|
|
| T |
45793821 |
aatgtctcaaattccacttgacctttgtttacatagaaggatatcaaagacttgaagatgagttgatatttgctgaatatattttgtggaac |
45793912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 342 - 444
Target Start/End: Complemental strand, 45794308 - 45794206
Alignment:
| Q |
342 |
aatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcggaacggacttgt |
441 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||||| | |||||||||| || ||||||| |||||| ||||| ||| | |||||| |
|
|
| T |
45794308 |
aatgtctcaaatcccacttgacctatgttcacatagaaggatatcaagaacttgaagatgatgtgtcatttgccgaatatattttggggagcatacttgt |
45794209 |
T |
|
| Q |
442 |
ttt |
444 |
Q |
| |
|
||| |
|
|
| T |
45794208 |
ttt |
45794206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 323 - 433
Target Start/End: Original strand, 45795071 - 45795181
Alignment:
| Q |
323 |
aagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaagatgagctggcatttgctgaatatg |
422 |
Q |
| |
|
|||||||||||| || | ||||| ||||||||||| |||||| | || ||||||||||||||||| || |||||||||| || ||||||||||||| |
|
|
| T |
45795071 |
aagtcaacaacaatttttgaatgtctcaaatcccacttgacctatgtttacatagaaggatatcaaagacttgaagatgaaatgatatttgctgaatata |
45795170 |
T |
|
| Q |
423 |
ttttgcggaac |
433 |
Q |
| |
|
||||| ||||| |
|
|
| T |
45795171 |
ttttgtggaac |
45795181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 8269508 - 8269425
Alignment:
| Q |
314 |
tgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattcacatagaaggatatcaaggatttgaa |
397 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||| ||| || |||| | ||||||||| ||||||||||||| |
|
|
| T |
8269508 |
tgggagccaaagtcaataacagttcctaaatgtcttgaatcccacatgatctatattaaaatagaaggaagtcaaggatttgaa |
8269425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 1250747 - 1250665
Alignment:
| Q |
316 |
ggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctt-tattcacatagaaggatatcaaggatttgaa |
397 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| | |||| ||| ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
1250747 |
ggagccaaagtcaataacagttcttaaatgtcttgaatcacacatgatctaatattaacatagaaggatatcaaggatttgaa |
1250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University