View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_high_13 (Length: 492)

Name: NF5258_high_13
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_high_13
NF5258_high_13
[»] chr7 (4 HSPs)
chr7 (262-432)||(32017430-32017600)
chr7 (20-234)||(32017173-32017402)
chr7 (150-194)||(27659295-27659339)
chr7 (266-326)||(5179668-5179728)
[»] chr5 (1 HSPs)
chr5 (150-234)||(37604709-37604793)
[»] chr4 (1 HSPs)
chr4 (266-343)||(23352988-23353066)
[»] chr2 (3 HSPs)
chr2 (173-228)||(25542676-25542731)
chr2 (298-340)||(3595141-3595183)
chr2 (150-198)||(3594981-3595028)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 262 - 432
Target Start/End: Original strand, 32017430 - 32017600
Alignment:
Q  262 gttagggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggcctttacacttcttgtgcaggtttggcgtaataaaatttt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32017430 gttagggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggcctttacacttcttgtgcaggtttggcgtgataaaatttt 32017529  T
Q  362 ccgtataaaaacaatgttaataacaaactattattttatcttttctacttaatatcttaagcttttccttt 432  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32017530 ccgtttaaaaacaatgttaataacaaactattattttatcttttctacttaatatcttaagcttttccttt 32017600  T

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Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 32017173 - 32017402
Alignment:
Q  20 ggagggtctgtgtttttcgagctgtgctctctgggttggttcacagcaggttttgttggtgttttcccctatgcggctgttctgctatctgtagtagtgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32017173 ggagggtctgtgtttttcgagctgtgctctctgggttggttcacagcaggttttgttggttttttcccctatgcggctgttctgctatctgtagtagtgc 32017272  T
Q  120 tgctgtcttnnnnnnntgcggggagtgttg---------------ttttctgctatctggcctgggaagggaggtctttgctgtttgtgaggcctgttaa 204  Q
    |||||||||       ||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  32017273 tgctgtcttgggggggtgcggggagtgttgtttactgcctgggctttttctgctatctggcctgggaagggaggtctttgctgtttgtgaggccttttta 32017372  T
Q  205 tgctttctggtctgctgtttgcgcctcccc 234  Q
    |||||||||||||||||||||| |||||||    
T  32017373 tgctttctggtctgctgtttgcacctcccc 32017402  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 27659295 - 27659339
Alignment:
Q  150 ttttctgctatctggcctgggaagggaggtctttgctgtttgtga 194  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  27659295 ttttctgctatctggcctgagaagggaggtctgtgctgtttgtga 27659339  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 5179668 - 5179728
Alignment:
Q  266 gggtgttccgcctatatacaacacctgatttatttttgtattgttgtttttgctggccttt 326  Q
    |||||||||||||||||||  ||||   |||  ||||||| ||||||||||||||||||||    
T  5179668 gggtgttccgcctatatacggcaccctgtttgattttgtactgttgtttttgctggccttt 5179728  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 37604793 - 37604709
Alignment:
Q  150 ttttctgctatctggcctgggaagggaggtctttgctgtttgtgaggcctgttaatgctttctggtctgctgtttgcgcctcccc 234  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37604793 ttttctgctatctggcttgggaagggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctgctgtttgcgcctcccc 37604709  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 23352988 - 23353066
Alignment:
Q  266 gggtgttccgcctatatacaacacctgattta-tttttgtattgttgtttttgctggcctttacacttcttgtgcaggt 343  Q
    |||||||||||||||||||  |||| |||||  ||||| |||||||||||||| |||||||| | ||||||||||||||    
T  23352988 gggtgttccgcctatatacggcacccgattttgtttttctattgttgtttttgatggcctttgcgcttcttgtgcaggt 23353066  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 25542676 - 25542731
Alignment:
Q  173 gggaggtctttgctgtttgtgaggcctgttaatgctttctggtctgctgtttgcgc 228  Q
    |||| |||||| ||||||||||||||||||  || |||||||||||||||||||||    
T  25542676 gggaagtcttttctgtttgtgaggcctgtttgtgttttctggtctgctgtttgcgc 25542731  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 3595141 - 3595183
Alignment:
Q  298 tttttgtattgttgtttttgctggcctttacacttcttgtgca 340  Q
    ||||| ||||||||||||||||||||||| | |||||||||||    
T  3595141 tttttatattgttgtttttgctggcctttgcgcttcttgtgca 3595183  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 3594981 - 3595028
Alignment:
Q  150 ttttctgctatctggcctgggaagggaggtctttgctgtttgtgaggcc 198  Q
    ||||||||||||||| |||||| |||| |||||| ||||||||||||||    
T  3594981 ttttctgctatctggtctggga-gggaagtcttttctgtttgtgaggcc 3595028  T

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