View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_14 (Length: 477)
Name: NF5258_high_14
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 5 - 458
Target Start/End: Complemental strand, 55455655 - 55455202
Alignment:
| Q |
5 |
tctattctgattaaagtagtttccttagtgtgacatattcgaaaacttatacctctcttttccgtcatttcccccttatccaagcaatctttactagctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55455655 |
tctattctgattaaagtagtttccttagtgtgacatattcgaaaacttatacctctcttttccgccatttcccccttatccaagcaatctttactagctc |
55455556 |
T |
|
| Q |
105 |
acacaactgaaggtttaccatttggcgagctatataagtttgtgactgatttagatatcaattggcaaaaaatcgctaaatcattagtcgctaatgttac |
204 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55455555 |
acacaactgaaggtttaccatttggcaagctatataagtttgtgactgatttagatatcaattggcaaaaaatcgctaaatcattagtcgctaatgttac |
55455456 |
T |
|
| Q |
205 |
caccgatttagtgagtgatttaacatttttcagtctcttaaatcggttgcaaaatcggtcaatgtgtaggagtttttctgtaatgttactaatctacata |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55455455 |
caccgatttagtgagtgatttaacatttttcagtctcttaaatcggttgcaaaatcggtcattgtgtaggagtttttctgtaatgttactaatctacata |
55455356 |
T |
|
| Q |
305 |
tatgatataacgtttatgggagttccttgatttaactaacgccgctgaaagaatgaaaaagaattcacaccataaaatggtatgtcaatcaatgagattt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55455355 |
tatgatataacgtttatgggagttccttgatttaactaacgccgctgaaagaatgaaaaagaattcacaccataaaatggtatgtcaatcaatgagattt |
55455256 |
T |
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| Q |
405 |
ttgtccaactgaaaatgttttctttttgaaggattgccgtttataaggctatct |
458 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55455255 |
ttgtccaactgaaaatgttgtctttttgaaggattgccgtttataaggctatct |
55455202 |
T |
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