View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_16 (Length: 459)
Name: NF5258_high_16
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 40113477 - 40113809
Alignment:
| Q |
17 |
agttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113477 |
agttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaaga |
40113576 |
T |
|
| Q |
117 |
gcggtcacttttgcttgtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagcttta |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113577 |
ggggtcacttttgcttgtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagcttta |
40113676 |
T |
|
| Q |
217 |
tgaagcttgcaaacatgattcagatactgtttatcttttagtcccggaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgt |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40113677 |
tgaagcttgcaaacatgattcggatactgtttatcttttagtcctggaggttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgt |
40113776 |
T |
|
| Q |
317 |
taacatcaagttggtgcagacgccaccctttcc |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
40113777 |
taacatcaagttggtgcagacgccaccctttcc |
40113809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 29080161 - 29080062
Alignment:
| Q |
346 |
ttcctccgaaattaaaaccctatcgatcctactcatcgaaactccattcagatgataccacgtaaaccttcttcccaacaatctcaaatcctccaactcc |
445 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29080161 |
ttcctccgaaattaaaaccctattgatcctactcatcgaaactccattcagatgataccacgtaaaccttcttcccaacaatctcaaatcctccaactcc |
29080062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 6406756 - 6406555
Alignment:
| Q |
17 |
agttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6406756 |
agttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaaga |
6406657 |
T |
|
| Q |
117 |
gcggtcacttttgcttgtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagcttta |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6406656 |
ggggtcacttttgcttgtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagcttta |
6406557 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
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|
| T |
6406556 |
tg |
6406555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 654603 - 654891
Alignment:
| Q |
17 |
agttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaaga |
116 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| || | |||||||||||| |||||||||||||||||||| | ||| || | |||||| |||| || |
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| T |
654603 |
agttgtgtaagaattgggcatcattacctgttagcaaaagatcatcaacatagaccaagaagtaggcaatgattggacctgaggtatatataaacaggga |
654702 |
T |
|
| Q |
117 |
gcggtcacttttgcttgtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagcttta |
216 |
Q |
| |
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| ||||||| ||||| ||||| || ||| | |||||||| || ||||| ||| |||||||||||||||||||||||| | ||||||||| || | ||| |
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| T |
654703 |
gaggtcactcttgctggtagtgaaaccaggggatgtgatgaaagctttgagaccatcatgccatgcacgaggtgcttatctaagaccataaattgatttg |
654802 |
T |
|
| Q |
217 |
tgaagcttgcaaacatgattcagatactgtttatcttttagtcccggaggttgactcatgtaaacatcttctttgagtaatccttgaag |
305 |
Q |
| |
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||||| ||||| |||||||| |||| ||||||||| | ||||| ||||| ||| |||||||||| ||||| |||||| || ||||||| |
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|
| T |
654803 |
tgaagtttgcacacatgatttggatattgtttatctctgagtcctggaggctgagtcatgtaaacttcttccttgagtgatgcttgaag |
654891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 3019151 - 3018952
Alignment:
| Q |
33 |
tgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatgaacaaagagcggtcacttttgctt |
132 |
Q |
| |
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||||||||| || ||||| || | |||||||||||| ||||| ||||| |||| ||| ||| || ||||||||||| | || | ||||||| |||| |
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|
| T |
3019151 |
tgcatcatttcccgttaaaagaagatcatcaacataaaccaaaaagtatgcaagagtagtacctgaggcatatatgaagagcgaaggatcactttggctt |
3019052 |
T |
|
| Q |
133 |
gtagtaaagccatgagatgtgataaaggcttttagagcatcatgccatgcacgaggtgcttgccgaagaccatagatagctttatgaagcttgcaaacat |
232 |
Q |
| |
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||||| ||||||||||| || || |||| ||| || ||||||||||| || | ||||||||||| || ||||| |||||||| || || |||||||||| |
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| T |
3019051 |
gtagtgaagccatgagaggtaatgaaggttttgagtgcatcatgccaagctctaggtgcttgccttaggccatatatagctttgtgtagtttgcaaacat |
3018952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 45190095 - 45190030
Alignment:
| Q |
266 |
gttgactcatgtaaacatcttctttgagtaatccttgaaggaacgcattgttaacatcaagttggt |
331 |
Q |
| |
|
|||||||||||||||| | |||| |||| ||||||||||||| |||||||||||||||||||||| |
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| T |
45190095 |
gttgactcatgtaaacttgttctgtgagagatccttgaaggaaagcattgttaacatcaagttggt |
45190030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 9036701 - 9036737
Alignment:
| Q |
298 |
ccttgaaggaacgcattgttaacatcaagttggtgca |
334 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
9036701 |
ccttgaaggaaggcattgttaacatcaagttgatgca |
9036737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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