View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_18 (Length: 422)
Name: NF5258_high_18
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 42 - 399
Target Start/End: Original strand, 11247886 - 11248246
Alignment:
| Q |
42 |
aaaagtaggcaccttaaattgtggaaacaagtagagcctagcagtaatgtagtagagaaagcaacgatgtggcagactcaagtgtaatgtcatacgtcct |
141 |
Q |
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| T |
11247886 |
aaaagtaggaaccttaaattgtggaaacaagtagagtctagcagcaatgtagtagagaaagcaacgatgtggcagactcaagtgtaatgtcatgcgtcct |
11247985 |
T |
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| Q |
142 |
ttacaacctccagcaacaagttaggcatatgcatgtgcattcgaatctaggagaagcattaggattatatcatgctatttggtggattcacgatttacaa |
241 |
Q |
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| T |
11247986 |
ttacaacctccagcaacaagttagacatatgcatgtgcattggaatctaggagaagcgttaggattacatcatgctatttggtggattcatgatttacaa |
11248085 |
T |
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| Q |
242 |
ctaacaaatatagacttagattgattcaaaaagagta---aactatttcaagcgaggtaatggcgatatcactaaatatagcgtcattatggatagtaac |
338 |
Q |
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| T |
11248086 |
ctaacaaatatagacttaggttgattcgaaaagagtagctaactagttcaagcgaggtaatgacgatatcattgaatatagcgtcattatggatagtaac |
11248185 |
T |
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| Q |
339 |
atacgatattgtaatctttatttagcaaactctcatgttaagtttaccataagaaaaacga |
399 |
Q |
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| T |
11248186 |
atacaatattataatctttatttaggaaactctcatgttgagtttaccagaagaaaaacga |
11248246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 41470478 - 41470581
Alignment:
| Q |
280 |
actatttcaagcgaggtaatggcgatatcactaaatatagcgtcattatggatagtaacatacgatattgtaatctttatttagcaaactctcatgttaa |
379 |
Q |
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| T |
41470478 |
actattttaaccgaggcaatggtgatatcacaaaatttgaggtcattatggatagtaataggcactattgttctctttatttaccaaactctcatgttga |
41470577 |
T |
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| Q |
380 |
gttt |
383 |
Q |
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|||| |
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| T |
41470578 |
gttt |
41470581 |
T |
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