View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5258_high_2 (Length: 768)

Name: NF5258_high_2
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5258_high_2
NF5258_high_2
[»] chr8 (1 HSPs)
chr8 (19-752)||(25116309-25117043)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 19 - 752
Target Start/End: Complemental strand, 25117043 - 25116309
Alignment:
Q  19 aatgctacctaaagataaagcgacgcaaaagaaatataacataaaatcatattaacttacttttatttaagacatcagcaaataatccttctgcacaaca 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  25117043 aatgctacctaaagataaagcgacgcaaaaaaaatataacataaaatcatattaacttacttttatttaagacatgaccaaataatccttctgcataaca 25116944  T
Q  119 acacttgattagaaatgataataaagggagaaaaaattcgactttgtattgatgtgaaaattggttgtaacattaccgttggattcacattgtgtcaaaa 218  Q
    |||||| ||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25116943 acactttattagaaataacaataaagggagaaaaaattagactttatattgatgtgaaaattggttgtaacattaccgttggattcgcattgtgtcaaaa 25116844  T
Q  219 actcgttaaatccctccacaagatcggagtgttttcccaacaaatcgcctacctgaatgcaacatgaattcttctccgtttcagtatttt-aacataatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  25116843 actcgttaaatccctccacaagatcggagtgttttcccaacaaatcgcctacctgaatgcaacatgaattcttctccgttacagtatttttaacataatt 25116744  T
Q  318 tttgtattaaagtttaatgttcaatgcaagccatattcaattcaagagttataggatgtgacagaaaatccaaaaatgtaacttctgaaaatttggatgt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25116743 tttgtattaaagtttaatgttcaatgcaagccatattcaattcaagagttataggatgtgacagaaaatcaaaaaatgtaacttctgaaaatttggatgt 25116644  T
Q  418 ataaacaacattaccattgtttgtagttcttctcttgtaattgttcccattctgtagctatgtagggacttctcaaatttttggtaatcctcgagtattc 517  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25116643 ataaacaatattaccattttttgtagttcttctcttgtaattgttcccattctgtagctatgtagggacttctcaaatttttggtaatcctcgagtattc 25116544  T
Q  518 ctaacctctctgtgactttgttcaggtaagaaaacgcttcactcgacataactgaaaatgccatgttttaaagtaataaacaaatcgtacttaaatgagt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || |||||||||    
T  25116543 ctaacctctctgtgactttgttcaggtaagaaaacgcttcactcgacataactgaaaatgaaatattttaaagtaataaacaaatcgaacgtaaatgagt 25116444  T
Q  618 tcactataataatcatgtaaccttcacctgtatgacactccnnnnnnncgtcacgcttctcatttgcactcatcgaacctttttcaatttctggatcagg 717  Q
    |||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25116443 tcactataatgatcatgtaaccttcacctgtatgacactcctttttttcgtcacgcttctcatttgcactcatcgaacctttgtcaatttctggatcagg 25116344  T
Q  718 atgttcgacaatgaggtcgcgatcacctttcttat 752  Q
    ||||||||||||||||||||||| |||||||||||    
T  25116343 atgttcgacaatgaggtcgcgattacctttcttat 25116309  T

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