View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5258_high_21 (Length: 397)
Name: NF5258_high_21
Description: NF5258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5258_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 34584470 - 34584842
Alignment:
| Q |
9 |
gacatcatcacagatatgaggacgaatcatggtgttggtatcaccttttggaggggttggaaggcataggtgcaagcaatgaacatcattgatggagatt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
34584470 |
gacatcataacagatatgaggacgaatcatggtgttggtatcaccttttggaggggttggaaggcaaaggtgcaagcaagaaacatcattgatggagatt |
34584569 |
T |
|
| Q |
109 |
cagcaaaacaatattcaaacttgtggagatatgcaactgaaattaagagggccactaatgctaactcagtgaaaattaatgttgttagatctataccaac |
208 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34584570 |
cagcaaaacaatattcaaacttatggagatatgcagctgaaattaagagggcctctgatgctaactcagtgaaaattaatgttgttagatctataccaac |
34584669 |
T |
|
| Q |
209 |
cctccaacccagatttggatctttttatttttgctttgaaggttgtaagcaagggctcttgaatggttgtagacccttcataggtgtggatggatgtcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34584670 |
cctccaacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcat |
34584769 |
T |
|
| Q |
309 |
ttgaaaacacaatatagtgggcaacttctgatagtagtgggaagagatgctaatgaccaatactatcctcttg |
381 |
Q |
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||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
34584770 |
ttgaaaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttg |
34584842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 30964356 - 30964728
Alignment:
| Q |
9 |
gacatcatcacagatatgaggacgaatcatggtgttggtatcaccttttggaggggttggaaggcataggtgcaagcaatgaacatcattgatggagatt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
30964356 |
gacatcataacagatatgaggacgaatcatggtgttggtatcaccttttggaggggttggaaggcaaaggtgcaagcaagaaacatcattgatggagatt |
30964455 |
T |
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| Q |
109 |
cagcaaaacaatattcaaacttgtggagatatgcaactgaaattaagagggccactaatgctaactcagtgaaaattaatgttgttagatctataccaac |
208 |
Q |
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||||||||||||||| |||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30964456 |
cagcaaaacaatattaaaacttatggagatatgcagctgaaattaagagggcctctgatgctaactcagtgaaaattaatgttgttagatctataccaac |
30964555 |
T |
|
| Q |
209 |
cctccaacccagatttggatctttttatttttgctttgaaggttgtaagcaagggctcttgaatggttgtagacccttcataggtgtggatggatgtcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30964556 |
cctccaacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcat |
30964655 |
T |
|
| Q |
309 |
ttgaaaacacaatatagtgggcaacttctgatagtagtgggaagagatgctaatgaccaatactatcctcttg |
381 |
Q |
| |
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||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
30964656 |
ttgaaaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttg |
30964728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 219 - 381
Target Start/End: Complemental strand, 1380043 - 1379881
Alignment:
| Q |
219 |
agatttggatctttttatttttgctttgaaggttgtaagcaagggctcttgaatggttgtagacccttcataggtgtggatggatgtcatttgaaaacac |
318 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
1380043 |
agatttggatctttctatttttgttttgaaggctgtaagcaagggttcttgaatggttgtagacccttcataggtgtggatggatgtcacttgaagacac |
1379944 |
T |
|
| Q |
319 |
aatatagtgggcaacttctgatagtagtgggaagagatgctaatgaccaatactatcctcttg |
381 |
Q |
| |
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||||| |||| ||| | |||||| ||| || |||||||||||||||||||| |||||||||| |
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| T |
1379943 |
aatatggtggtcaattgttgatagcagtaggcagagatgctaatgaccaatattatcctcttg |
1379881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 219 - 381
Target Start/End: Original strand, 17323050 - 17323212
Alignment:
| Q |
219 |
agatttggatctttttatttttgctttgaaggttgtaagcaagggctcttgaatggttgtagacccttcataggtgtggatggatgtcatttgaaaacac |
318 |
Q |
| |
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|||||||||||||| |||||||| |||||||| |||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
17323050 |
agatttggatctttctatttttgttttgaaggatgtaggaaagggttcttgaatggttgtagacctttcataggtgtggatggatgtcacttgaagacac |
17323149 |
T |
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| Q |
319 |
aatatagtgggcaacttctgatagtagtgggaagagatgctaatgaccaatactatcctcttg |
381 |
Q |
| |
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||||| |||| ||| | |||||| ||| || |||||||||||||||||||| |||||||||| |
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| T |
17323150 |
aatatggtggtcaattgttgatagcagtaggcagagatgctaatgaccaatattatcctcttg |
17323212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 202 - 377
Target Start/End: Original strand, 37875428 - 37875603
Alignment:
| Q |
202 |
taccaaccctccaacccagatttggatctttttatttttgctttgaaggttgtaagcaagggctcttgaatggttgtagacccttcataggtgtggatgg |
301 |
Q |
| |
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||||||| || || || |||||||| || || ||||| ||||||||||| | || | |||| |||||| ||| |||||||| ||||| ||||| ||||| |
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| T |
37875428 |
taccaacacttcagccaagatttggttcattctatttctgctttgaaggcttgaaactagggttcttgactggatgtagaccattcattggtgttgatgg |
37875527 |
T |
|
| Q |
302 |
atgtcatttgaaaacacaatatagtgggcaacttctgatagtagtgggaagagatgctaatgaccaatactatcct |
377 |
Q |
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||||| |||| ||||||||| |||| ||| | |||||| || ||||||||||||||||| ||||| |||||| |
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| T |
37875528 |
gtgtcacctgaagacacaatatggtggtcaattattgatagctgttggaagagatgctaatgatcaatattatcct |
37875603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 22371037 - 22370988
Alignment:
| Q |
274 |
gttgtagacccttcataggtgtggatggatgtcatttgaaaacacaatat |
323 |
Q |
| |
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||||||| || |||||||| |||||||| |||||||||||||| |||||| |
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| T |
22371037 |
gttgtaggccattcataggggtggatggttgtcatttgaaaacccaatat |
22370988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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